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-rw-r--r--tests/unit/test_partial_correlations.py80
1 files changed, 80 insertions, 0 deletions
diff --git a/tests/unit/test_partial_correlations.py b/tests/unit/test_partial_correlations.py
index f204d4f..0083ef7 100644
--- a/tests/unit/test_partial_correlations.py
+++ b/tests/unit/test_partial_correlations.py
@@ -1,7 +1,87 @@
"""Module contains tests for gn3.partial_correlations"""
from unittest import TestCase
+from gn3.partial_correlations import control_samples
+sampleslist = ["B6cC3-1", "BXD1", "BXD12", "BXD16", "BXD19", "BXD2"]
+control_traits = (
+ {
+ "mysqlid": 36688172,
+ "data": {
+ "B6cC3-1": {
+ "sample_name": "B6cC3-1", "value": 7.51879, "variance": None,
+ "ndata": None},
+ "BXD1": {
+ "sample_name": "BXD1", "value": 7.77141, "variance": None,
+ "ndata": None},
+ "BXD12": {
+ "sample_name": "BXD12", "value": 8.39265, "variance": None,
+ "ndata": None},
+ "BXD16": {
+ "sample_name": "BXD16", "value": 8.17443, "variance": None,
+ "ndata": None},
+ "BXD19": {
+ "sample_name": "BXD19", "value": 8.30401, "variance": None,
+ "ndata": None},
+ "BXD2": {
+ "sample_name": "BXD2", "value": 7.80944, "variance": None,
+ "ndata": None}}},
+ {
+ "mysqlid": 36688172,
+ "data": {
+ "B6cC3-21": {
+ "sample_name": "B6cC3-1", "value": 7.51879, "variance": None,
+ "ndata": None},
+ "BXD21": {
+ "sample_name": "BXD1", "value": 7.77141, "variance": None,
+ "ndata": None},
+ "BXD12": {
+ "sample_name": "BXD12", "value": 8.39265, "variance": None,
+ "ndata": None},
+ "BXD16": {
+ "sample_name": "BXD16", "value": 8.17443, "variance": None,
+ "ndata": None},
+ "BXD19": {
+ "sample_name": "BXD19", "value": 8.30401, "variance": None,
+ "ndata": None},
+ "BXD2": {
+ "sample_name": "BXD2", "value": 7.80944, "variance": None,
+ "ndata": None}}},
+ {
+ "mysqlid": 36688172,
+ "data": {
+ "B6cC3-1": {
+ "sample_name": "B6cC3-1", "value": 7.51879, "variance": None,
+ "ndata": None},
+ "BXD1": {
+ "sample_name": "BXD1", "value": 7.77141, "variance": None,
+ "ndata": None},
+ "BXD12": {
+ "sample_name": "BXD12", "value": None, "variance": None,
+ "ndata": None},
+ "BXD16": {
+ "sample_name": "BXD16", "value": None, "variance": None,
+ "ndata": None},
+ "BXD19": {
+ "sample_name": "BXD19", "value": None, "variance": None,
+ "ndata": None},
+ "BXD2": {
+ "sample_name": "BXD2", "value": 7.80944, "variance": None,
+ "ndata": None}}})
class TestPartialCorrelations(TestCase):
"""Class for testing partial correlations computation functions"""
+
+ def test_control_samples(self):
+ """Test that the control_samples works as expected."""
+ self.assertEqual(
+ control_samples(control_traits, sampleslist),
+ ((("B6cC3-1", "BXD1", "BXD12", "BXD16", "BXD19", "BXD2"),
+ ("BXD12", "BXD16", "BXD19", "BXD2"),
+ ("B6cC3-1", "BXD1", "BXD2")),
+ ((7.51879, 7.77141, 8.39265, 8.17443, 8.30401, 7.80944),
+ (8.39265, 8.17443, 8.30401, 7.80944),
+ (7.51879, 7.77141, 7.80944)),
+ ((None, None, None, None, None, None), (None, None, None, None),
+ (None, None, None)),
+ (6, 4, 3)))