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authorFrederick Muriuki Muriithi2021-10-29 08:38:48 +0300
committerBonfaceKilz2021-11-04 12:45:57 +0300
commitfed4c481eceb0ce464deee6262b96676eb869ad3 (patch)
treedcc72ad1449cdd866e3311185b09283006b3e167 /tests
parent9ceb958273b8d86d220fa0d2f040fcb4a8233586 (diff)
downloadgenenetwork3-fed4c481eceb0ce464deee6262b96676eb869ad3.tar.gz
Specify ten (10) decimal places
Issue:
https://github.com/genenetwork/gn-gemtext-threads/blob/main/topics/gn1-migration-to-gn2/partial-correlations.gmi

* gn3/computations/partial_correlations.py: specify 10 decimal places
* tests/unit/computations/test_partial_correlations.py: update examples

  Slight differences in python implementations, possibly hardware and
  operating systems could cause the value of float (double) values to be
  different in the less significant parts of the decimal places.

  This commit limits the usable part of the decimals to the first 10 decimal
  places for now.
Diffstat (limited to 'tests')
-rw-r--r--tests/unit/computations/test_partial_correlations.py5
1 files changed, 2 insertions, 3 deletions
diff --git a/tests/unit/computations/test_partial_correlations.py b/tests/unit/computations/test_partial_correlations.py
index ac5eb20..c4ec79a 100644
--- a/tests/unit/computations/test_partial_correlations.py
+++ b/tests/unit/computations/test_partial_correlations.py
@@ -254,10 +254,9 @@ class TestPartialCorrelations(TestCase):
         """
         for primary, target, method, expected in (
                 ((12.34, 18.36, 42.51), (37.25, 46.25, 46.56), "pearson",
-                 (0.6761779252651052, 0.5272701133657985)),
+                 (0.6761779253, 0.5272701134)),
                 ((1, 2, 3, 4, 5), (5, 6, 7, 8, 7), "spearman",
-                 (0.8207826816681233, 0.08858700531354381))
-        ):
+                 (0.8207826817, 0.0885870053))):
             with self.subTest(primary=primary, target=target, method=method):
                 self.assertEqual(
                     tissue_correlation(primary, target, method), expected)