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| author | Munyoki Kilyungi | 2024-10-11 12:25:16 +0300 |
|---|---|---|
| committer | BonfaceKilz | 2024-10-14 23:50:49 +0300 |
| commit | 238945cece6baa5980713a529eda789f938f618b (patch) | |
| tree | 3484c835be2d68be624eecbe7639bca3d5056e04 /tests/unit/db/rdf/test_wiki.py | |
| parent | 8f462decf33af36311d0f15bf13860ab062b5e38 (diff) | |
| download | genenetwork3-238945cece6baa5980713a529eda789f938f618b.tar.gz | |
Replace CONSTRUCT with SELECT for fetching RIF NCBI entries.
* gn3/db/rdf/wiki.py: Delete datetime import. Import sparql_query. [RIF_CONTEXT]: Delete. (get_rif_entries_by_symbol): Replace CONSTRUCT with SELECT. * tests/unit/db/rdf/test_wiki.py (test_get_rif_entries_by_symbol): Update tests. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
Diffstat (limited to 'tests/unit/db/rdf/test_wiki.py')
| -rw-r--r-- | tests/unit/db/rdf/test_wiki.py | 7 |
1 files changed, 5 insertions, 2 deletions
diff --git a/tests/unit/db/rdf/test_wiki.py b/tests/unit/db/rdf/test_wiki.py index 7a0dc3a..150130e 100644 --- a/tests/unit/db/rdf/test_wiki.py +++ b/tests/unit/db/rdf/test_wiki.py @@ -405,8 +405,11 @@ def test_update_wiki_comment(rdf_setup): # pylint: disable=W0613,W0621 def test_get_rif_entries_by_symbol(rdf_setup): # pylint: disable=W0613,W0621 """Test fetching NCBI Rif Metadata from RDF""" sparql_conf = SPARQL_CONF - assert get_rif_entries_by_symbol( + entries = get_rif_entries_by_symbol( symbol="Lpl", sparql_uri=sparql_conf["sparql_endpoint"], graph=GRAPH, - ) == LPL_RIF_ENTRIES + ) + assert len(LPL_RIF_ENTRIES["data"]) == len(entries["data"]) + for result, expected in zip(LPL_RIF_ENTRIES["data"], entries["data"]): + TestCase().assertDictEqual(result, expected) |