From 238945cece6baa5980713a529eda789f938f618b Mon Sep 17 00:00:00 2001 From: Munyoki Kilyungi Date: Fri, 11 Oct 2024 12:25:16 +0300 Subject: Replace CONSTRUCT with SELECT for fetching RIF NCBI entries. * gn3/db/rdf/wiki.py: Delete datetime import. Import sparql_query. [RIF_CONTEXT]: Delete. (get_rif_entries_by_symbol): Replace CONSTRUCT with SELECT. * tests/unit/db/rdf/test_wiki.py (test_get_rif_entries_by_symbol): Update tests. Signed-off-by: Munyoki Kilyungi --- tests/unit/db/rdf/test_wiki.py | 7 +++++-- 1 file changed, 5 insertions(+), 2 deletions(-) (limited to 'tests/unit/db/rdf/test_wiki.py') diff --git a/tests/unit/db/rdf/test_wiki.py b/tests/unit/db/rdf/test_wiki.py index 7a0dc3a..150130e 100644 --- a/tests/unit/db/rdf/test_wiki.py +++ b/tests/unit/db/rdf/test_wiki.py @@ -405,8 +405,11 @@ def test_update_wiki_comment(rdf_setup): # pylint: disable=W0613,W0621 def test_get_rif_entries_by_symbol(rdf_setup): # pylint: disable=W0613,W0621 """Test fetching NCBI Rif Metadata from RDF""" sparql_conf = SPARQL_CONF - assert get_rif_entries_by_symbol( + entries = get_rif_entries_by_symbol( symbol="Lpl", sparql_uri=sparql_conf["sparql_endpoint"], graph=GRAPH, - ) == LPL_RIF_ENTRIES + ) + assert len(LPL_RIF_ENTRIES["data"]) == len(entries["data"]) + for result, expected in zip(LPL_RIF_ENTRIES["data"], entries["data"]): + TestCase().assertDictEqual(result, expected) -- cgit 1.4.1