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| author | Munyoki Kilyungi | 2023-11-20 17:04:14 +0300 |
|---|---|---|
| committer | BonfaceKilz | 2023-11-27 12:29:25 +0300 |
| commit | cce9170f9e00c7f88e1be774930d1b96a4a3d915 (patch) | |
| tree | 89886847f79031eee053057ca8eb5277a5269458 /gn3/api | |
| parent | 143443fc8cbc58ef31c4595a000d374491c11fc9 (diff) | |
| download | genenetwork3-cce9170f9e00c7f88e1be774930d1b96a4a3d915.tar.gz | |
Replace "ex:" prefix with a semantic prefix when fetching phenotype.
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
Diffstat (limited to 'gn3/api')
| -rw-r--r-- | gn3/api/metadata.py | 13 |
1 files changed, 7 insertions, 6 deletions
diff --git a/gn3/api/metadata.py b/gn3/api/metadata.py index ac582ed..97b081f 100644 --- a/gn3/api/metadata.py +++ b/gn3/api/metadata.py @@ -101,6 +101,7 @@ PHENOTYPE_CONTEXT = BASE_CONTEXT | PUBLICATION_CONTEXT | { "skos": "http://www.w3.org/2004/02/skos/core#", "rdfs": "http://www.w3.org/2000/01/rdf-schema#", "gnt": "http://genenetwork.org/term/", + "dcat": "http://www.w3.org/ns/dcat#", "prism": "http://prismstandard.org/namespaces/basic/2.0/", "gnc": "http://genenetwork.org/category/", "traitName": "skos:altLabel", @@ -110,9 +111,7 @@ PHENOTYPE_CONTEXT = BASE_CONTEXT | PUBLICATION_CONTEXT | { "abbreviation": "gnt:abbreviation", "labCode": "gnt:labCode", "submitter": "gnt:submitter", - "ex": "http://example.org/stuff/1.0/", - "species": "ex:species", - "group": "ex:inbredSet", + "dataset": "dcat:Distribution", "contributor": "dct:contributor", "mean": "gnt:mean", "locus": "gnt:locus", @@ -120,6 +119,8 @@ PHENOTYPE_CONTEXT = BASE_CONTEXT | PUBLICATION_CONTEXT | { "references": "dct:isReferencedBy", "additive": "gnt:additive", "sequence": "gnt:sequence", + "species": "gnt:belongsToSpecies", + "group": "gnt:belongsToGroup", } metadata = Blueprint("metadata", __name__) @@ -426,9 +427,9 @@ $prefix CONSTRUCT { ?phenotype ?predicate ?object ; ?pubPredicate ?pubObject ; - ex:species ?speciesName ; - ex:inbredSet ?inbredSetName ; - ex:dataset ?datasetName . + gnt:belongsToSpecies ?speciesName ; + dcat:Distribution ?dataset ; + gnt:belongsToGroup ?inbredSetName . } WHERE { ?phenotype skos:altLabel "$name" ; xkos:classifiedUnder ?inbredSet ; |