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| author | Frederick Muriuki Muriithi | 2023-04-06 12:31:05 +0300 |
|---|---|---|
| committer | Frederick Muriuki Muriithi | 2023-04-06 12:31:05 +0300 |
| commit | 17abad9300e4a96a14f94da486ef8307f7d27e06 (patch) | |
| tree | 38fe3bfd36be9a821adfc67b83fbbd587ceb8b5e /gn3/api/correlation.py | |
| parent | 3d873435f0d464864d4d691d6be4db40931fac05 (diff) | |
| download | genenetwork3-17abad9300e4a96a14f94da486ef8307f7d27e06.tar.gz | |
Remove deprecated `gn3.db_utils.database_connector` function
Remove the deprecated function and fix a myriad of bugs that arise from
removing the function.
Issue: https://issues.genenetwork.org/issues/bugfix_coupling_current_app_and_db_utils
Diffstat (limited to 'gn3/api/correlation.py')
| -rw-r--r-- | gn3/api/correlation.py | 4 |
1 files changed, 2 insertions, 2 deletions
diff --git a/gn3/api/correlation.py b/gn3/api/correlation.py index 6e70899..eb4cc7d 100644 --- a/gn3/api/correlation.py +++ b/gn3/api/correlation.py @@ -9,7 +9,7 @@ from flask import request from flask import current_app from gn3.settings import SQL_URI -from gn3.db_utils import database_connector +from gn3.db_utils import database_connection from gn3.commands import run_sample_corr_cmd from gn3.responses.pcorrs_responses import build_response from gn3.commands import run_async_cmd, compose_pcorrs_command @@ -64,7 +64,7 @@ def compute_lit_corr(species=None, gene_id=None): might be needed for actual computing of the correlation results """ - with database_connector() as conn: + with database_connection(current_app.config["SQL_URI"]) as conn: target_traits_gene_ids = request.get_json() target_trait_gene_list = list(target_traits_gene_ids.items()) |