From 17abad9300e4a96a14f94da486ef8307f7d27e06 Mon Sep 17 00:00:00 2001
From: Frederick Muriuki Muriithi
Date: Thu, 6 Apr 2023 12:31:05 +0300
Subject: Remove deprecated `gn3.db_utils.database_connector` function

Remove the deprecated function and fix a myriad of bugs that arise from
removing the function.

Issue: https://issues.genenetwork.org/issues/bugfix_coupling_current_app_and_db_utils
---
 gn3/api/correlation.py | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

(limited to 'gn3/api/correlation.py')

diff --git a/gn3/api/correlation.py b/gn3/api/correlation.py
index 6e70899..eb4cc7d 100644
--- a/gn3/api/correlation.py
+++ b/gn3/api/correlation.py
@@ -9,7 +9,7 @@ from flask import request
 from flask import current_app
 
 from gn3.settings import SQL_URI
-from gn3.db_utils import database_connector
+from gn3.db_utils import database_connection
 from gn3.commands import run_sample_corr_cmd
 from gn3.responses.pcorrs_responses import build_response
 from gn3.commands import run_async_cmd, compose_pcorrs_command
@@ -64,7 +64,7 @@ def compute_lit_corr(species=None, gene_id=None):
     might be needed for actual computing of the correlation results
     """
 
-    with database_connector() as conn:
+    with database_connection(current_app.config["SQL_URI"]) as conn:
         target_traits_gene_ids = request.get_json()
         target_trait_gene_list = list(target_traits_gene_ids.items())
 
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