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2024-10-25Change the way the flash_me functions such that there's no margin...flash_me handles displaying various notifications and error messages (like when you log out, or when you token expires) zsloan
2024-10-22Add GN2 Fallback link to index page and and error page/text...Also removed the error callback from the menu AJAX call since it seems to just duplicate the error message (which is also handled by the statusCode function) zsloan
2024-10-17Fix wildcard search for Genotype searcheszsloan
2024-10-17Remove GeneWeaver link...It currently doesn't work and we're not sure what request is needed to get it working again. It seems like GeneWeaver may have replaced their previous functionality with just a REST API, so if we reimplement this we may need to handle the display ourselves (since GeneWeaver may only return results as JSON) zsloan
2024-10-17Replace global search icon with just the text 'Search'...Rob had mentioned wanting this change due to confusion over the icon zsloan
2024-10-15Include formatted Bin position in search results as an extra column when rele...zsloan
2024-10-15Increase phenotype description with on correlation result page tablezsloan
2024-10-15fix: use url_for to get genewiki urlJohn Nduli
2024-10-15feat: edit shows login message if not loggedinJohn Nduli
2024-10-15feat: add gn2 button to link to edittingJohn Nduli
2024-10-15Merge pull request #880 from genenetwork/chores/implement-clear-field-for-inputs... Implement clear search field for global search.Alexander Kabui
2024-10-14Remove empty div....Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> Munyoki Kilyungi
2024-10-14Add display page for NCBI RIF metadata....Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> Munyoki Kilyungi
2024-10-09Update application's allowed scopes...The `register-client` and `migrate-data` scopes are not supported for end-user clients. Frederick Muriuki Muriithi
2024-10-09Pass the scope from the token, not application...There are at times when a token's scope could be attenuated for whatever reason from the full scope allowed to the application. In those instances, it is necessary to use the token's scope rather than the full scope. Frederick Muriuki Muriithi
2024-10-04Refactor: add better help message for xapian search hints.Alexander_Kabui
2024-10-04feat: Implement clear search field for global search.Alexander_Kabui
2024-10-01Merge pull request #877 from genenetwork/feature/cleanup-base-file...Feature/cleanup base fileAlexander Kabui
2024-09-27Refactor: use url_for to fetch static files.Alexander_Kabui
2024-09-26feat: Modify templates to extend from index_page....* This ensures we have the global search functionality included for all. Alexander_Kabui
2024-09-26Refactor: Fix order for importing css and js files.Alexander_Kabui
2024-09-26Refactor: Apply linting to gsearch template file.Alexander_Kabui
2024-09-25DEBUG: Log out R/qtl2 or Pair-Scan results...Running R/qtl2 and Pair-Scan results in the production container fails, but somehow runs on production. This implies a possible configuration thing that is not explicit. Hopefully this debug helps surface the cause to enable fixing. Frederick Muriuki Muriithi
2024-09-24Fix how name/dataset are passed to hmac_creation in Xapian search results...Apparently the .data is necessary, because otherwise it passed some "Just" class that is interpreted as a hash or something. This causes an hmac mismatch when you do things like WebGestalt (and presumably other link-outs as well) zsloan
2024-09-24Call the function to get the result.Frederick Muriuki Muriithi
2024-09-24Fix: use logged_in function to check user auth status.Alexander_Kabui
2024-09-24Feat: extend index_page for gsearch_geno and pheno to include global...search in templates. Alexander_Kabui
2024-09-24Refactor: remove custom css from base file.Alexander_Kabui
2024-09-24Refactor: refactor global search code in index file....* Include global search via gsearch template. Alexander_Kabui
2024-09-24Refactor: move global search functionality to own module.Alexander_Kabui
2024-09-24Refactor: apply djlint for index page file.Alexander_Kabui
2024-09-23Add method to clear redirect url from session.Alexander_Kabui
2024-09-23Fix: link to the correct url for xapian syntax help.Alexander_Kabui
2024-09-23Refactor: run djlint for base html file.Alexander_Kabui
2024-09-23Refactor: remove empty classes and ids.Alexander_Kabui
2024-09-23Refactor: remove empty classes.Alexander_Kabui
2024-09-23Fix: fix orphan tags.Alexander_Kabui
2024-09-23Fix: use correct classname for dropdown.Alexander_Kabui
2024-09-23Fix: close spans with caret class.Alexander_Kabui
2024-09-23Refactor: run djlint for index page file.Alexander_Kabui
2024-09-23Refactor: move global search js to index file.Alexander_Kabui
2024-09-23Refactor: move global search css to index page.Alexander_Kabui
2024-09-23Refactor: Init move search from base to index file.Alexander_Kabui
2024-09-20Fix cases where index for '.' and ',' do not exist for do_ai_search.Alexander_Kabui
2024-09-20Minor fix: remove unused variable name.Alexander_Kabui
2024-09-20Add request exception handler for gn-docs.Alexander_Kabui
2024-09-20Add error template for gn_docs.Alexander_Kabui
2024-09-19Add a page for searching GeneWiki by symbol....* gn2/wqflask/templates/wiki/search.html: New template. * gn2/wqflask/views.py (search_wiki): New end-point. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> Munyoki Kilyungi
2024-09-19Merge pull request #875 from genenetwork/chores/implement-redirect-for-gn2-auth...Chores/implement redirect for users Alexander Kabui
2024-09-18Show the Location for the Description when selecting a cofactor that is a gen...zsloan