| Age | Commit message (Expand) | Author |
|---|
| 2023-10-24 | Add script for creating list of ProbeSet datasets with NAs for Max QTL | zsloan |
| 2023-10-24 | Make DataTables automatically adjust columns are generating the table | zsloan |
| 2023-10-24 | Prevent search result table from having the scroll bar not be visible at the ... | zsloan |
| 2023-10-11 | Fix placeholder text for correlation page Select Rows feature | zsloan |
| 2023-10-11 | Re-enable filter options for correlations against phenotype traits | zsloan |
| 2023-10-09 | collections: make POST requests•••Convert the requests that either create a new collection, or add
traits to an existing collection to use the "POST" method, since such
requests are not idempotent.
| Frederick Muriuki Muriithi |
| 2023-10-06 | Change WebGestalt URL to use HTTPS | zsloan |
| 2023-10-06 | Provide default `CORRELATION_COMMAND` setting. Remove unused import. | Frederick Muriuki Muriithi |
| 2023-10-03 | Include cached_trait parameter for scatterplot, so it knows which trait to us... | zsloan |
| 2023-09-25 | Remove parents/f1s from Other sample group | zsloan |
| 2023-09-25 | Invert rows/columns for multi-trait export | zsloan |
| 2023-09-25 | Swap parameters for mapping scatterplot, since the genotype markers were bein... | zsloan |
| 2023-09-25 | Update function for getting number of collections in scatterplot page | zsloan |
| 2023-09-21 | Fix the way id_ is accessed from existing_publication | zsloan |
| 2023-09-21 | Remove check for collections from mapping cofactor selection UI | zsloan |
| 2023-09-21 | Add update_cross_reference to imports | zsloan |
| 2023-09-20 | Revert "Revert "Remove SECRET_KEY from mandatory start up check""•••This reverts commit 89abbdd63840b1a1ea27f7dc8c5146563193b23a.
| Frederick Muriuki Muriithi |
| 2023-09-20 | Revert "Remove SECRET_KEY from mandatory start up check"•••This reverts commit 093cad933bfd241e993afbbd431d64efdd354e1d.
| Frederick Muriuki Muriithi |
| 2023-09-19 | Add links to GN-hosted portals | zsloan |
| 2023-09-13 | Remove unnecessary sections.•••* .github/PULL_REQUEST_TEMPLATE.md: Delete unnecessary sections.
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
| Munyoki Kilyungi |
| 2023-09-13 | Remove GN2 generif link.•••* wqflask/wqflask/templates/show_trait_details.html: Delete GN2
generif link.
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
| Munyoki Kilyungi |
| 2023-09-13 | add mastadon feed to homepage | Alexander_Kabui |
| 2023-09-13 | Patch MySQLdb.escape_string to use use a connection.•••* wqflask/utility/db_tools.py: Delete MySQLdb.escape_. Import
get_setting, database_connection.
(escape_): New function.
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
| Munyoki Kilyungi |
| 2023-09-12 | Replace escape with function that uses conn.escape_string | zsloan |
| 2023-09-12 | Remove SECRET_KEY from mandatory start up check•••* wqflask/wqflask/startup.py <startup_errors>: Remove SECRET_KEY which
was introduced in d193cec7a8985.
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
| Munyoki Kilyungi |
| 2023-09-11 | Trigger CI build.•••Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
| Munyoki Kilyungi |
| 2023-09-11 | Replace string concat with os.path.join.•••* wqflask/utility/tools.py (assert_writable_dir): Use "os.path.join"
to concatenate paths.
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
| Munyoki Kilyungi |
| 2023-09-11 | Add missing key in actual results.•••* wqflask/tests/unit/wqflask/show_trait/test_export_trait_data.py
(TestExportTraits.test_get_export_metadata)<results>: Add "group" as
extra key.
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
| Munyoki Kilyungi |
| 2023-09-08 | Replace escape with conn.escape_string•••* wqflask/wqflask/do_search.py (DoSearch.mescape): Replace escape with
conn.escape_string.
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
| Munyoki Kilyungi |
| 2023-09-08 | Remove unused import•••Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
| Munyoki Kilyungi |
| 2023-09-07 | Handle 'invalid_token' error | Frederick Muriuki Muriithi |
| 2023-09-05 | Fix export for temp traits | zsloan |
| 2023-09-05 | Fix issue where X and Y axis were the same when using data ID for correlation... | zsloan |
| 2023-09-05 | Skip unittest•••Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
| Munyoki Kilyungi |
| 2023-09-05 | Replace assertRegexpMatches with assertRegex•••Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
| Munyoki Kilyungi |
| 2023-09-05 | Replace scipy.isnan with numpy.isnan•••* wqflask/wqflask/api/correlation.py (get_sample_r_and_p_values):
Replace scipy.isnan with numpy.isnan. scipy.isnan is deprecated and
will be removed in SciPy 2.0.0
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
| Munyoki Kilyungi |
| 2023-09-05 | Re-add hard-coded PYTHONPATH•••Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
| Munyoki Kilyungi |
| 2023-09-05 | Remove PYTHONPATH check•••Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
| Munyoki Kilyungi |
| 2023-09-05 | Trigger CI build•••Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
| Munyoki Kilyungi |
| 2023-09-05 | Remove PYTHONPATH injection•••Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
| Munyoki Kilyungi |
| 2023-08-31 | Don't show decimal places when all values are integers | zsloan |
| 2023-08-31 | Update URL on tutorials page | zsloan |
| 2023-08-31 | Use error-display utility•••Use the error-display utility to get rid of an unnecessary
error-handling function.
| Frederick Muriuki Muriithi |
| 2023-08-31 | Check for token expiry•••Check whether a token has expired before attempting to use it. Clear
the session if the token has expired.
| Frederick Muriuki Muriithi |
| 2023-08-24 | Make download icon on search result page the same as other pages | zsloan |
| 2023-08-24 | Change order of options in mapping page + fix sort for 5th column of table | zsloan |
| 2023-08-24 | Change inputs for pheno sample data CSV function + only fetch sample data for... | zsloan |
| 2023-08-24 | Change URL for phenotype CSV download + only show sample table if fewer than ... | zsloan |
| 2023-08-17 | Combine pheno/mrna update functions + add dataset_name parameter for fetching... | zsloan |
| 2023-08-17 | Implement ProbeSet sample data editing | zsloan |
