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| author | Frederick Muriuki Muriithi | 2023-10-06 11:31:18 +0300 |
|---|---|---|
| committer | Frederick Muriuki Muriithi | 2023-10-06 11:31:18 +0300 |
| commit | bdcfb440fd9fd8d0fa2c70e3fe1bd0a1bc9d01e2 (patch) | |
| tree | bcc3304898b9c40445b12afe5c0157abe64885d7 | |
| parent | 0244237f49db76724fab9511eb07d6641dcdc3c7 (diff) | |
| download | genenetwork2-bdcfb440fd9fd8d0fa2c70e3fe1bd0a1bc9d01e2.tar.gz | |
Provide default `CORRELATION_COMMAND` setting. Remove unused import.
| -rw-r--r-- | etc/default_settings.py | 1 | ||||
| -rw-r--r-- | wqflask/scripts/corr_compute.py | 1 |
2 files changed, 1 insertions, 1 deletions
diff --git a/etc/default_settings.py b/etc/default_settings.py index 0ffe6ae9..b7d41bca 100644 --- a/etc/default_settings.py +++ b/etc/default_settings.py @@ -112,6 +112,7 @@ JS_GN_PATH = os.environ['HOME'] + "/genenetwork/javascript" # PLINK_COMMAND = str.strip(os.popen("which plink2").read()) # GEMMA_COMMAND = str.strip(os.popen("which gemma").read()) REAPER_COMMAND = os.environ['GN2_PROFILE'] + "/bin/qtlreaper" +CORRELATION_COMMAND = os.environ["GN2_PROFILE"] + "/bin/correlation_rust" # GEMMA_WRAPPER_COMMAND = str.strip(os.popen("which gemma-wrapper").read()) OAUTH2_CLIENT_ID="0bbfca82-d73f-4bd4-a140-5ae7abb4a64d" diff --git a/wqflask/scripts/corr_compute.py b/wqflask/scripts/corr_compute.py index c98a66a4..34c3ad54 100644 --- a/wqflask/scripts/corr_compute.py +++ b/wqflask/scripts/corr_compute.py @@ -32,7 +32,6 @@ def e_time(): def compute(form): import subprocess - from gn3.settings import CORRELATION_COMMAND try: correlation_results = compute_correlation(form, compute_all=True) except Exception as exc: |