aboutsummaryrefslogtreecommitdiff
AgeCommit message (Collapse)Author
2023-11-17Log out query errorsFrederick Muriuki Muriithi
Log out failures in querying the database as errors to help with catching issues with and debugging of queries.
2023-11-13Fix bug that caused hitting Enter on regular search after hitting Enter for ↵zsloan
global search to wrongly submit global search instead
2023-11-13Secrets: Enable separate secrets settings fileFrederick Muriuki Muriithi
Enable a separate secrets settings file to be provided where necessary. The secrets settings file will hold security-critical configuration values that should not be exposed in the repository.
2023-11-11DB docsPjotr Prins
2023-11-09Set correlation table width to 90%zsloan
2023-11-09Make adjustments to correlation tablezsloan
- Disable scroller when fewer than 2000 rows. Scroller causes a problem where you can't reach certain rows when manually scroller when rows are too 'tall' (so when descriptions are long and the window is smaller) - Disable width for Abbreviation and increase width for Peak Position so it doesn't get pushed to two lines
2023-11-06Use correct prefix for auth server's url.Munyoki Kilyungi
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
2023-11-06Revert "Disable SSL check when checking whether user is logged in."Munyoki Kilyungi
This reverts commit b178e8f8944141632032103fb5b06e3a0746d4f3.
2023-11-06Disable SSL check when checking whether user is logged in.Munyoki Kilyungi
* wqflask/wqflask/views.py (index_page): Set "verify=False" in no_token_get. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
2023-11-06Get full trace of SSL error and reduce number of retries in MR.Munyoki Kilyungi
* test/requests/test-website.py (host_is_online): Reduce tries from 10 to 5. Also, print out the full error---useful for CD debugging. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
2023-11-06Use latest self-hosted guix-bioinformatics channel.Munyoki Kilyungi
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
2023-11-06Disable SSL check on Mechanical Rob.Munyoki Kilyungi
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
2023-11-06Update the default auth url.Munyoki Kilyungi
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
2023-10-26case-attribute: approve/reject diffFrederick Muriuki Muriithi
Make calls to the API server to approve or reject a diff, depending on the user's actions. Clean up the UI elements to remove debug artifacts.
2023-10-26case-attributes: View the diffs.Frederick Muriuki Muriithi
2023-10-26CaseAttribute: List out the diffsFrederick Muriuki Muriithi
List out the diffs and create placeholders for active elements that do not yet have the back-end code that handles them.
2023-10-26CaseAttributes: Provide UI for diffs list.Frederick Muriuki Muriithi
2023-10-26CaseAttribute: Add link to enable editing case attributes.Frederick Muriuki Muriithi
2023-10-26Rework "success" function.Frederick Muriuki Muriithi
2023-10-26CaseAttributes: Bug: Fix query.Frederick Muriuki Muriithi
2023-10-26Fix URL: Make requests to GN3 not gn-authFrederick Muriuki Muriithi
Provide a "wrapped" requests module that returns an Either monad rather than a request directly. Send requests to GN3 rather than gn-auth
2023-10-26Use auth-server for authenticationFrederick Muriuki Muriithi
Authenticate with the Auth-server (gn-auth) to get the token to use on the API server (GN3).
2023-10-26Call utils to replace unnecessary functions.Frederick Muriuki Muriithi
2023-10-26Process data before sending to APIFrederick Muriuki Muriithi
2023-10-26UI for case-attribute editing.Frederick Muriuki Muriithi
2023-10-26Remove references to "group roles".Frederick Muriuki Muriithi
2023-10-26Update template: remove group from resourcesFrederick Muriuki Muriithi
2023-10-26Remove group from resourceFrederick Muriuki Muriithi
A resource is not linked directly to a user group any more.
2023-10-26Update role view: Add link to resource.Frederick Muriuki Muriithi
2023-10-26Fetch system roles from new `/auth/system/roles` endpoint.Frederick Muriuki Muriithi
2023-10-26Use gn-auth as the authorisation server.Frederick Muriuki Muriithi
2023-10-25Always cache mapping results for a month, even if Copy and Share isn't clickedzsloan
2023-10-25Remove expiration time when caching mapping inputszsloan
2023-10-24Add script for converting the HXBBXH genotype file provided by Hao.zsloan
Paths and sample/chromosome lists are hard-coded just because this was probably a one-time thing, but still commiting it since it's good to have it around in case we need to use it again
2023-10-24Add script for creating list of ProbeSet datasets with NAs for Max QTLzsloan
2023-10-24Make DataTables automatically adjust columns are generating the tablezsloan
2023-10-24Prevent search result table from having the scroll bar not be visible at the ↵zsloan
edge of the browser window
2023-10-11Fix placeholder text for correlation page Select Rows featurezsloan
2023-10-11Re-enable filter options for correlations against phenotype traitszsloan
2023-10-09collections: make POST requestsFrederick Muriuki Muriithi
Convert the requests that either create a new collection, or add traits to an existing collection to use the "POST" method, since such requests are not idempotent.
2023-10-06Change WebGestalt URL to use HTTPSzsloan
2023-10-06Provide default `CORRELATION_COMMAND` setting. Remove unused import.Frederick Muriuki Muriithi
2023-10-03Include cached_trait parameter for scatterplot, so it knows which trait to ↵zsloan
use the cached data for
2023-09-25Remove parents/f1s from Other sample groupzsloan
2023-09-25Invert rows/columns for multi-trait exportzsloan
2023-09-25Swap parameters for mapping scatterplot, since the genotype markers were ↵zsloan
being pulled from the dataid instead of the trait sample values
2023-09-25Update function for getting number of collections in scatterplot pagezsloan
2023-09-21Fix the way id_ is accessed from existing_publicationzsloan
2023-09-21Remove check for collections from mapping cofactor selection UIzsloan
2023-09-21Add update_cross_reference to importszsloan
generated by cgit v1.2.3 (git 2.44.0) at 2024-10-19 12:37:58 +0000