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2024-03-05configs: Fetch configs from app not `gn2.utility.tools`Frederick Muriuki Muriithi
Fetch configurations from the application, rather than from the `gn2.utility.tools` module that does not get the updated values from the secrets file.
2024-03-05Pick secrets from config file.Frederick Muriuki Muriithi
2024-03-04Include ALL html templates.Frederick Muriuki Muriithi
2024-03-02Doc database layoutPjotr Prins
2024-03-02doc: databasingPjotr Prins
2024-02-29Fix URI to queryFrederick Muriuki Muriithi
2024-02-21Merge pull request #834 from genenetwork/chores/replace-js-external-linksAlexander Kabui
Replacing JS External Links with Guix Packages
2024-02-21use font-awesome version 4.7.0Alexander_Kabui
2024-02-19Fix font pathszsloan
2024-02-16pep8 formattingAlexander_Kabui
2024-02-16Add gnqa error pageAlexander_Kabui
2024-02-16init check for user loginAlexander_Kabui
2024-02-16fix for gnqa-ui:replace gnqa history buttonAlexander_Kabui
2024-02-15replace emfed cdn with local static filesAlexander_Kabui
2024-02-15add emfed js file to static filesAlexander_Kabui
2024-02-15add emfed style file locallyAlexander_Kabui
2024-02-15fix font awesome package pathAlexander_Kabui
2024-02-15Rework how the tissueInfo and platformInfo are fetched in template.Munyoki Kilyungi
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
2024-02-15Add display of experiment type to dataset template.Munyoki Kilyungi
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
2024-02-15replace cdn uikit with guix packageAlexander_Kabui
2024-02-14replace d3js libAlexander_Kabui
2024-02-14replace jquery-ui cdn with guix packagingAlexander_Kabui
2024-02-14replace cdn jquery.js with guix packageAlexander_Kabui
2024-02-14remove bootstrap js external linkAlexander_Kabui
2024-02-14replace bootstrap external linkAlexander_Kabui
2024-02-14replace datatable cdn links with guix packagesAlexander_Kabui
2024-02-14fetch xterm cdn from guixAlexander_Kabui
2024-02-14replace font awesome external linksAlexander_Kabui
2024-01-30Fix path in mechanical-rob testsFrederick Muriuki Muriithi
2024-01-30Use XPath to specify form, and refine testFrederick Muriuki Muriithi
Use XPath to pick the form by its ID rather than its numerical position which can change with the addition of (a) form(s) before the one we wish to test.
2024-01-30Error reporting: Pass external error forward to GN2's error handlingFrederick Muriuki Muriithi
2024-01-30Create framework for error handling and handle connection errorsFrederick Muriuki Muriithi
2024-01-25fix on UI wordingAlexander_Kabui
2024-01-25fix issue loading gnqa prev queries on base fileAlexander_Kabui
2024-01-25add view point for gnqa search historyAlexander_Kabui
2024-01-25Add modal for search historyAlexander_Kabui
2024-01-19Add list panel implementationAlexander_Kabui
2024-01-18fix for qnqa ui letter spacingAlexander_Kabui
2024-01-16fix typo errorAlexander_Kabui
2024-01-16Merge pull request #828 from genenetwork/feature/reference-rating-uiAlexander Kabui
add UI for reference rating gn-llm documents
2024-01-16add UI for reference rating gn-llm documentsAlexander_Kabui
2024-01-12Correctly patch the db connection when fetching accession_id.Munyoki Kilyungi
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> Co-authored-by: Alexander Kabui <alexanderkabua@gmail.com>
2024-01-12Switch NCBI link from http to https in failing test and RDF query.Munyoki Kilyungi
* gn2/tests/wqflask/show_trait/test_show_trait.py (test_get_ncbi_summary_request): Replace "http://eutils.ncbi.nlm.nih.gov" with "https://eutils.ncbi.nlm.nih.gov" * gn2/wqflask/views.py (get_probeset): Ditto. Co-authored-by: Alexander Kabui <Alexanderkabua@gmail.com> Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
2024-01-12doc/testing.org: Fix minor typo.Munyoki Kilyungi
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
2024-01-10Check whether the metadata.dataset group first exists.Munyoki Kilyungi
* gn2/wqflask/templates/genotype.html: Add metadata.dataset check in and clause. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
2024-01-10Add a compare button that shows the current genotype page.Munyoki Kilyungi
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
2024-01-10Add dataset metadata to genotype page when a dataset is specified.Munyoki Kilyungi
* gn2/wqflask/templates/genotype.html: Add extra dataset metadata. * gn2/wqflask/views.py (get_genotype): Extend genotype URL to enable specifying the dataset name. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
2024-01-09Fix the way accession_id is set + update info link on correlation pagezsloan
2024-01-09Update script's module path.Frederick Muriuki Muriithi
2024-01-09Update module pathsFrederick Muriuki Muriithi
With the reorganisation, a number of module paths changed, and need to be updated. This commit fixes a few obvious ones.