Age | Commit message (Collapse) | Author | |
---|---|---|---|
2023-10-09 | collections: make POST requests | Frederick Muriuki Muriithi | |
Convert the requests that either create a new collection, or add traits to an existing collection to use the "POST" method, since such requests are not idempotent. | |||
2023-10-06 | Change WebGestalt URL to use HTTPS | zsloan | |
2023-10-06 | Provide default `CORRELATION_COMMAND` setting. Remove unused import. | Frederick Muriuki Muriithi | |
2023-10-03 | Include cached_trait parameter for scatterplot, so it knows which trait to ↵ | zsloan | |
use the cached data for | |||
2023-09-25 | Remove parents/f1s from Other sample group | zsloan | |
2023-09-25 | Invert rows/columns for multi-trait export | zsloan | |
2023-09-25 | Swap parameters for mapping scatterplot, since the genotype markers were ↵ | zsloan | |
being pulled from the dataid instead of the trait sample values | |||
2023-09-25 | Update function for getting number of collections in scatterplot page | zsloan | |
2023-09-21 | Fix the way id_ is accessed from existing_publication | zsloan | |
2023-09-21 | Remove check for collections from mapping cofactor selection UI | zsloan | |
2023-09-21 | Add update_cross_reference to imports | zsloan | |
2023-09-20 | Revert "Revert "Remove SECRET_KEY from mandatory start up check"" | Frederick Muriuki Muriithi | |
This reverts commit 89abbdd63840b1a1ea27f7dc8c5146563193b23a. | |||
2023-09-20 | Revert "Remove SECRET_KEY from mandatory start up check" | Frederick Muriuki Muriithi | |
This reverts commit 093cad933bfd241e993afbbd431d64efdd354e1d. | |||
2023-09-19 | Add links to GN-hosted portals | zsloan | |
2023-09-13 | Remove unnecessary sections. | Munyoki Kilyungi | |
* .github/PULL_REQUEST_TEMPLATE.md: Delete unnecessary sections. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
2023-09-13 | Remove GN2 generif link. | Munyoki Kilyungi | |
* wqflask/wqflask/templates/show_trait_details.html: Delete GN2 generif link. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
2023-09-13 | add mastadon feed to homepage | Alexander_Kabui | |
2023-09-13 | Patch MySQLdb.escape_string to use use a connection. | Munyoki Kilyungi | |
* wqflask/utility/db_tools.py: Delete MySQLdb.escape_. Import get_setting, database_connection. (escape_): New function. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
2023-09-12 | Replace escape with function that uses conn.escape_string | zsloan | |
2023-09-12 | Remove SECRET_KEY from mandatory start up check | Munyoki Kilyungi | |
* wqflask/wqflask/startup.py <startup_errors>: Remove SECRET_KEY which was introduced in d193cec7a8985. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
2023-09-11 | Trigger CI build. | Munyoki Kilyungi | |
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
2023-09-11 | Replace string concat with os.path.join. | Munyoki Kilyungi | |
* wqflask/utility/tools.py (assert_writable_dir): Use "os.path.join" to concatenate paths. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
2023-09-11 | Add missing key in actual results. | Munyoki Kilyungi | |
* wqflask/tests/unit/wqflask/show_trait/test_export_trait_data.py (TestExportTraits.test_get_export_metadata)<results>: Add "group" as extra key. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
2023-09-08 | Replace escape with conn.escape_string | Munyoki Kilyungi | |
* wqflask/wqflask/do_search.py (DoSearch.mescape): Replace escape with conn.escape_string. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
2023-09-08 | Remove unused import | Munyoki Kilyungi | |
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
2023-09-07 | Handle 'invalid_token' error | Frederick Muriuki Muriithi | |
2023-09-05 | Fix export for temp traits | zsloan | |
2023-09-05 | Fix issue where X and Y axis were the same when using data ID for ↵ | zsloan | |
correlation scatterplot | |||
2023-09-05 | Skip unittest | Munyoki Kilyungi | |
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
2023-09-05 | Replace assertRegexpMatches with assertRegex | Munyoki Kilyungi | |
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
2023-09-05 | Replace scipy.isnan with numpy.isnan | Munyoki Kilyungi | |
* wqflask/wqflask/api/correlation.py (get_sample_r_and_p_values): Replace scipy.isnan with numpy.isnan. scipy.isnan is deprecated and will be removed in SciPy 2.0.0 Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
2023-09-05 | Re-add hard-coded PYTHONPATH | Munyoki Kilyungi | |
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
2023-09-05 | Remove PYTHONPATH check | Munyoki Kilyungi | |
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
2023-09-05 | Trigger CI build | Munyoki Kilyungi | |
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
2023-09-05 | Remove PYTHONPATH injection | Munyoki Kilyungi | |
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
2023-08-31 | Don't show decimal places when all values are integers | zsloan | |
2023-08-31 | Update URL on tutorials page | zsloan | |
2023-08-31 | Use error-display utility | Frederick Muriuki Muriithi | |
Use the error-display utility to get rid of an unnecessary error-handling function. | |||
2023-08-31 | Check for token expiry | Frederick Muriuki Muriithi | |
Check whether a token has expired before attempting to use it. Clear the session if the token has expired. | |||
2023-08-24 | Make download icon on search result page the same as other pages | zsloan | |
2023-08-24 | Change order of options in mapping page + fix sort for 5th column of table | zsloan | |
2023-08-24 | Change inputs for pheno sample data CSV function + only fetch sample data ↵ | zsloan | |
for table when fewer than 2000 samples | |||
2023-08-24 | Change URL for phenotype CSV download + only show sample table if fewer than ↵ | zsloan | |
2000 samples | |||
2023-08-17 | Combine pheno/mrna update functions + add dataset_name parameter for ↵ | zsloan | |
fetching group name | |||
2023-08-17 | Implement ProbeSet sample data editing | zsloan | |
2023-08-17 | Increase the size of the field for editing phenotype sample data (so it can ↵ | zsloan | |
fit up to 6 digits) | |||
2023-08-17 | Increase the size of the field for editing probe set sample data (so it can ↵ | zsloan | |
fit up to 6 digits) | |||
2023-08-17 | Implement probeset sample data editing up until the approval step | zsloan | |
2023-08-17 | Fix probeset editing template to detect changes to sample values | zsloan | |
2023-08-17 | Fix probeset editing html to be the same as pheno editing | zsloan | |