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| author | Munyoki Kilyungi | 2023-09-05 16:42:52 +0300 |
|---|---|---|
| committer | Munyoki Kilyungi | 2023-09-05 16:42:52 +0300 |
| commit | 5ebfcb223fe223de68c90dbac4116cf8384391c4 (patch) | |
| tree | 09c3b0bb8569d403f76085d5212aff6e6dbacb69 /bin | |
| parent | c78d50fa95b6b92b0d025a4fbb590f4eb1bf0774 (diff) | |
| download | genenetwork2-5ebfcb223fe223de68c90dbac4116cf8384391c4.tar.gz | |
Re-add hard-coded PYTHONPATH
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
Diffstat (limited to 'bin')
| -rwxr-xr-x | bin/genenetwork2 | 10 |
1 files changed, 5 insertions, 5 deletions
diff --git a/bin/genenetwork2 b/bin/genenetwork2 index 6c42c21f..a03ad6ef 100755 --- a/bin/genenetwork2 +++ b/bin/genenetwork2 @@ -112,7 +112,7 @@ if [ -z "${GN2_PROFILE}" ]; then read -p "PRESS [ENTER] TO CONTINUE..." else export PATH=$GN2_PROFILE/bin:$PATH - # export PYTHONPATH="$GN2_PROFILE/lib/python3.9/site-packages" # never inject another PYTHONPATH!! + export PYTHONPATH="$GN2_PROFILE/lib/python3.10/site-packages" # never inject another PYTHONPATH!! export R_LIBS_SITE=$GN2_PROFILE/site-library export JS_GUIX_PATH=$GN2_PROFILE/share/genenetwork2/javascript export GUIX_GTK3_PATH="$GN2_PROFILE/lib/gtk-3.0" @@ -133,10 +133,10 @@ else done <<< "$PYTHONPATH" if [ ! -d "${R_LIBS_SITE}" ] ; then echo "R_LIBS_SITE not valid ${R_LIBS_SITE}" ; exit 1 ; fi fi -# if [ -z "${PYTHONPATH}" ] ; then -# echo "ERROR PYTHONPATH has not been set - use GN2_PROFILE!" -# exit 1 -# fi +if [ -z "${PYTHONPATH}" ] ; then + echo "ERROR PYTHONPATH has not been set - use GN2_PROFILE!" + exit 1 +fi if [ ! -d "${R_LIBS_SITE}" ] ; then echo "ERROR R_LIBS_SITE has not been set correctly (we only allow one path) - use GN2_PROFILE!" echo "Paste into your shell the output of (for example)" |