From a99d72418d2349ba782fa4e48e68c46426641a01 Mon Sep 17 00:00:00 2001
From: Frederick Muriuki Muriithi
Date: Tue, 9 Jan 2024 16:37:12 +0300
Subject: Update module paths

With the reorganisation, a number of module paths changed, and need to
be updated. This commit fixes a few obvious ones.
---
 bin/genenetwork2 | 2 +-
 gn2/jobs/jobs.py | 2 +-
 gn2/runserver.py | 2 +-
 3 files changed, 3 insertions(+), 3 deletions(-)

diff --git a/bin/genenetwork2 b/bin/genenetwork2
index 3e2f31d3..01026811 100755
--- a/bin/genenetwork2
+++ b/bin/genenetwork2
@@ -223,4 +223,4 @@ fi
 
 # Start the flask server running GN2
 echo "Starting with $settings"
-python gn2.runserver.py
+python -m gn2.runserver
diff --git a/gn2/jobs/jobs.py b/gn2/jobs/jobs.py
index f796fa9a..dfcdf274 100644
--- a/gn2/jobs/jobs.py
+++ b/gn2/jobs/jobs.py
@@ -58,7 +58,7 @@ def queue(redis_conn: Redis, job: dict) -> UUID:
 
 def run(job_id: UUID, redis_uri: str):
     command = [
-        sys.executable, "-m", "scripts.run_external",
+        sys.executable, "-m", "gn2.scripts.run_external",
         f"--redis-uri={redis_uri}", "run-job", str(job_id)]
     print(f"COMMAND: {shlex.join(command)}")
     subprocess.Popen(command)
diff --git a/gn2/runserver.py b/gn2/runserver.py
index 45a51385..0c95f715 100644
--- a/gn2/runserver.py
+++ b/gn2/runserver.py
@@ -7,7 +7,7 @@
 #
 # /sbin/iptables -A INPUT -p tcp -i eth0 -s ! 71.236.239.43 --dport 5003 -j DROP
 
-from gn2_main import app
+from gn2.gn2_main import app
 from gn2.utility.startup_config import app_config
 from gn2.utility.tools import WEBSERVER_MODE, SERVER_PORT
 
-- 
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