blob: 077178770b51769e34297119bfbc4773328892ea (
plain)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
|
{% extends "layout.html" %}
{% block content %}
<p>
<br>
{{ message | safe }}
<form action="/progress">
<input name="query" class="form-control form-control-lg" type="search" placeholder="Rgma Nrxn3" aria-label="search" value="">
<button class="btn btn-outline-success my-2 my-sm-0" type="submit">Search</button>
</form>
<br>
This app searches PubMed to find <i>sentences</i> that contain the query terms (e.g., gene symbols) and <a href="https://github.com/chen42/RatsPub/blob/master/ratspub.py#L95-L129">keywords</a> related to drug addiction.
<p>
<br>
Searches are conducted through PubMed to get relevant PMIDs, which are then used to retrieve the abstracts from a <a href="https://dataguide.nlm.nih.gov/edirect/archive.html">local archive</a>. The gene-keyword relationships are presented as an interactive <a href="https://js.cytoscape.org" >cytoscape</a> graph. The nodes can be moved to better reveal the connections. Tap on the links will bring up the corresponding sentences in a new browser window.
<p>
<form action="/gene_gene">
<input name="gene" class="form-control form-control-lg" type="search" placeholder="Rgma Nrxn3" aria-label="search" value="Nrxn1">
<button class="btn btn-outline-success my-2 my-sm-0" type="submit">Search</button>
</form>
<hr>
<a href="https://github.com/chen42/ratspub"> Source code </a>
{% endblock %}
|
