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#!/bin/env python3
from flask import Flask, render_template, request, redirect
import simplejson as json
from ratspub import *
app=Flask(__name__)
app.config['SECRET_KEY'] = '#DtfrL98G5t1dC*4'
@app.route("/")
def root():
return render_template('index.html')
@app.route("/search")
def search():
global all_sentences
all_sentences=str()
genes=request.args.get('query')
genes=genes.replace(",", " ")
genes=genes.replace(";", " ")
genes=genes.split()
nodes=default_nodes
edges=str()
for gene in genes:
nodes+="{ data: { id: '" + gene + "', nodecolor:'#FADBD8', fontweight:700} },\n"
sent0=gene_addiction(gene)
e0=generate_edges(sent0)
sent1=gene_functional(gene)
e1=generate_edges(sent1)
sent2=gene_anatomical(gene)
e2=generate_edges(sent2)
edges+=e0+e1+e2
all_sentences+=sent0+sent1+sent2
f=open("all_sentences.tab","w")
f.write(all_sentences)
f.close()
return render_template('cytoscape.html', elements=nodes+edges)
@app.route("/sentences")
def sentences():
edge=request.args.get('edgeID')
(gene0, cat0)=edge.split("|")
print (gene0 + cat0)
out="<h3>"+gene0 + " and " + cat0 + "</h3>\n"
for sent in all_sentences.split("\n"):
#print (sent)
if len(sent.strip())!=0:
(gene,nouse,cat, pmid, text)=sent.split("\t")
if (gene == gene0 and cat == cat0) :
out+= "<li> "+ text + " <a href=\"https://www.ncbi.nlm.nih.gov/pubmed/?term=" + pmid +"\" target=_new>PMID:"+pmid+"<br></a>"
return render_template('sentences.html', sentences=out+"<p>")
if __name__ == '__main__':
app.run(debug=True)
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