index
:
genecup
this commit
master
Deep learning method for linking pubmed with custom ontology
about
summary
refs
log
tree
commit
diff
log msg
author
committer
range
Age
Commit message (
Expand
)
Author
12 days
Add findutils to propagated inputs (guix.scm)
HEAD
master
Pjotr Prins
12 days
Merge branch 'master' of /home/git/public/genecup
Pjotr Prins
12 days
Add curl to propagated inputs (guix.scm)
Pjotr Prins
12 days
Propagate (guix.scm) xargs
Pjotr Prins
12 days
Combine pubmed online search to a single query
Pjotr Prins
12 days
Only 3 letter abbreviations
Pjotr Prins
12 days
Add form feedback
Pjotr Prins
12 days
Getting ontology results
Pjotr Prins
12 days
Create template
Pjotr Prins
12 days
Add aliases
Pjotr Prins
12 days
Added a test that creates an ontology
Pjotr Prins
13 days
1.9.1 release
Pjotr Prins
13 days
Get rid of outdated error
Pjotr Prins
13 days
Use template to show intermediate phase
Pjotr Prins
13 days
Show page when calling GEMINI API
Pjotr Prins
13 days
Some cleanup and make GEMINI API cache work
Pjotr Prins
13 days
The Gemini call now retries up to 3 times with a backoff delay (2s, then 4s) ...
Pjotr Prins
13 days
Also cache gemini results
Pjotr Prins
13 days
Cache PMID search hits
Pjotr Prins
13 days
Make it more DRY
Pjotr Prins
13 days
Add hybrid search finds us more abstracts
Pjotr Prins
13 days
Add hybrid search
Pjotr Prins
13 days
Add local search test
Pjotr Prins
13 days
Add a test for a network fetch
Pjotr Prins
13 days
Added test for esearch
Pjotr Prins
13 days
Settings now use edirect updated EDIRECT_LOCAL_ARCHIVE
Pjotr Prins
13 days
Use the short fetch-pubmed -path /path/to/archive → xfetch -db pubmed repla...
Pjotr Prins
13 days
Add test framework
Pjotr Prins
13 days
Unpacking XML files as an alternative for fetch-pubmed works, but not complet...
Pjotr Prins
13 days
Update (README)
Pjotr Prins
13 days
Add examples using local fethch
Pjotr Prins
13 days
Example (guix.scm) add load path
Pjotr Prins
2026-04-03
Patch (edirect) to avoid panic during indexing
Pjotr Prins
2026-04-03
Fix edirect (guix) with unzip
Pjotr Prins
2026-04-01
add (edirect) gzip
Pjotr Prins
2026-04-01
fix (edirect)
Pjotr Prins
2026-04-01
fix (edirect)
Pjotr Prins
2026-04-01
Path fixes (edirect) and renamed package to edirect-25
Pjotr Prins
2026-04-01
Still fixing edirect
Pjotr Prins
2026-04-01
Fix (edirect) pubmed.ini
Pjotr Prins
2026-04-01
Fixing edirect
Pjotr Prins
2026-04-01
Fix edirect error ERROR: No data supplied to stdin or file, mode: 'Dcrw--w-...
Pjotr Prins
2026-03-31
Added recent edirect tooling (guix.scm)
Pjotr Prins
2026-03-30
Add systemd example for fetching the archive
Pjotr Prins
2026-03-29
Update README
Pjotr Prins
2026-03-29
Add example search
Pjotr Prins
2026-03-29
Move API key into credentials file [AI]
Pjotr Prins
2026-03-29
Split pipe commands, so we can see how long they take
Pjotr Prins
2026-03-29
Show gemini error in result
Pjotr Prins
2026-03-29
Missing comma
Pjotr Prins
[next]