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| author | gunturkunhakan | 2021-07-01 22:03:04 -0500 |
|---|---|---|
| committer | gunturkunhakan | 2021-07-01 22:03:04 -0500 |
| commit | c08a7a39a6703422e94c6217fd8b19403f6010ab (patch) | |
| tree | 20cbef059388230915e13b47005b799cf39cfe5f | |
| parent | eec87541da723543cfafe6f5b7cff1ec5774ba2e (diff) | |
| download | genecup-c08a7a39a6703422e94c6217fd8b19403f6010ab.tar.gz | |
fixed a bug
| -rwxr-xr-x | more_functions.py | 27 |
1 files changed, 14 insertions, 13 deletions
diff --git a/more_functions.py b/more_functions.py index 21d6cbc..7c21c2a 100755 --- a/more_functions.py +++ b/more_functions.py @@ -59,12 +59,13 @@ def gene_category(gene, cat_d, cat, abstracts,addiction_flag,dictn): key_ad = key_ad.replace("s|", "s*|") key_ad = key_ad.replace("|", "s*|") key_ad = key_ad.replace("s*s*", "s*") - #if findWholeWord(key_ad)(sent) : - re_find = re.compile(r'\b{}\b'.format(key_ad), re.IGNORECASE) - if re_find.findall(sent): - sent=sent.replace("<b>","").replace("</b>","") # remove other highlights - sent=re.sub(r'\b(%s)\b' % key_ad, r'<b>\1</b>', sent, flags=re.I) # highlight keyword - out+=gene+"\t"+ cat + "\t"+key+"\t"+sent+"\n" + key_ad_ls = key_ad.split('|') + for key_ad in key_ad_ls: + re_find = re.compile(r'\b{}\b'.format(key_ad), re.IGNORECASE) + if re_find.findall(sent): + sent=sent.replace("<b>","").replace("</b>","") # remove other highlights + sent=re.sub(r'\b(%s)\b' % key_ad, r'<b>\1</b>', sent, flags=re.I) # highlight keyword + out+=gene+"\t"+ cat + "\t"+key+"\t"+sent+"\n" else: for key_1 in dictn[cat_d].keys(): for key_2 in dictn[cat_d][key_1]: @@ -75,14 +76,14 @@ def gene_category(gene, cat_d, cat, abstracts,addiction_flag,dictn): key_2 = key_2.replace("s|", "s*|") key_2 = key_2.replace("|", "s*|") key_2 = key_2.replace("s*s*", "s*") + key_2_ls = key_2.split('|') for sent in sents.split("\n"): - re_find = re.compile(r'\b{}\b'.format(key_2), re.IGNORECASE) - #if findWholeWord(key_2)(sent) : - #if re.compile(r'\b(%s)\b' %key_2,sent, re.IGNORECASE): - if re_find.findall(sent): - sent=sent.replace("<b>","").replace("</b>","") # remove other highlights - sent=re.sub(r'\b(%s)\b' % key_2, r'<b>\1</b>', sent, flags=re.I) # highlight keyword - out+=gene+"\t"+ cat + "\t"+key_1+"\t"+sent+"\n" + for key_2 in key_2_ls: + re_find = re.compile(r'\b{}\b'.format(key_2), re.IGNORECASE) + if re_find.findall(sent): + sent=sent.replace("<b>","").replace("</b>","") # remove other highlights + sent=re.sub(r'\b(%s)\b' % key_2, r'<b>\1</b>', sent, flags=re.I) # highlight keyword + out+=gene+"\t"+ cat + "\t"+key_1+"\t"+sent+"\n" return(out) def generate_nodes(nodes_d, nodetype,nodecolor): |