diff options
Diffstat (limited to 'templates')
| -rw-r--r-- | templates/cytoscape.html | 10 | ||||
| -rw-r--r-- | templates/index.html | 16 | ||||
| -rw-r--r-- | templates/layout.html | 4 | ||||
| -rw-r--r-- | templates/sentences.html | 3 |
4 files changed, 16 insertions, 17 deletions
diff --git a/templates/cytoscape.html b/templates/cytoscape.html index fd2000e..c0c6bf6 100644 --- a/templates/cytoscape.html +++ b/templates/cytoscape.html @@ -22,7 +22,7 @@ css: { 'content': 'data(sentCnt)', 'curve-style': 'bezier', - 'opacity': '0.3' + 'opacity': 'mapData(sentCnt, 1, 50, 0.2, 0.3)', } }, { selector: 'node.highlight', @@ -50,6 +50,7 @@ name: 'circle' } }); + cy.on('tap', 'edge', function(){ try { // your browser may block popups window.open( this.data('url') ); @@ -57,6 +58,13 @@ window.location.href = this.data('url'); } }); + cy.on('tap', 'node', function(){ + try { // your browser may block popups + window.open( this.data('url') ); + } catch(e){ // fall back on url change + window.location.href = this.data('url'); + } + }); cy.on('mouseover', 'node', function(e){ var sel = e.target; cy.elements().difference(sel.outgoers()).not(sel).addClass('semitransp'); diff --git a/templates/index.html b/templates/index.html index ba18e0c..011aa6f 100644 --- a/templates/index.html +++ b/templates/index.html @@ -3,22 +3,14 @@ <p> <form action="/search"> - <input name="query" class="form-control form-control-lg" type="search" placeholder="e.g., Rgma Nrxn3, up to 5 terms are allowed" aria-label="search" value=""> + <input name="query" class="form-control form-control-lg" type="search" placeholder="Rgma Nrxn3" aria-label="search" value=""> <button class="btn btn-outline-success my-2 my-sm-0" type="submit">Search</button> </form> <br> - This app searches PubMed to find <u>sentences</u> that contain the query terms (e.g., gene symbols) and a drug addiction related keyword. <a href="https://github.com/chen42/RatsPub/blob/master/ratspub.py#L95-L129">These keywords</a> belong to the following categories: -<ul> -<li> names of abused drugs, e.g., opioids</li> -<li> terms describing addiction, e.g., relapse </li> -<li> key brain regions implicated in addiction, e.g., ventral striatum </li> -<li> neurotrasmission, e.g., dopaminergic </li> -<li> synaptic plasticity, e.g., long term potentiation </li> -<li> intracellular signaling, e.g., phosphorylation </li> -</ul> - + This app searches PubMed to find <i>sentences</i> that contain the query terms (e.g., gene symbols, <b>up to five are allowed per search</b>) and <a href="https://github.com/chen42/RatsPub/blob/master/ratspub.py#L95-L129">keywords</a> related to drug addiction. + <p> <br> -Live searches are conducted through PubMed to get relevant PMIDs, which are then used to retrieve the abstracts from a <a href="https://dataguide.nlm.nih.gov/edirect/archive.html">local archive</a>. The relationships are presented as an interactive <a href="https://js.cytoscape.org" >cytoscape</a> graph. The nodes can be moved around to better reveal the connections. Clicking on the links will bring up the corresponding sentences in a new browser window. +Searches are conducted through PubMed to get relevant PMIDs, which are then used to retrieve the abstracts from a <a href="https://dataguide.nlm.nih.gov/edirect/archive.html">local archive</a>. The relationships are presented as an interactive <a href="https://js.cytoscape.org" >cytoscape</a> graph. The nodes can be moved around to better reveal the connections. Clicking on the links will bring up the corresponding sentences in a new browser window. <p> <hr> <a href="https://github.com/chen42/ratspub"> Source code </a> diff --git a/templates/layout.html b/templates/layout.html index d64b331..cf8e8ed 100644 --- a/templates/layout.html +++ b/templates/layout.html @@ -13,7 +13,7 @@ </head> <body> - <nav class="navbar navbar-expand-lg navbar-light bg-light"> + <nav class="navbar navbar-expand-lg navbar-dark bg-dark"> <a class="navbar-brand" href="/">RatsPub:</br> <span style="font-size:small"> <u>R</u>elationship with <u>A</u>ddiction <u>T</u>hrough <u>S</u>earches of <u>Pub</u>Med </span></a> <button class="navbar-toggler" type="button" data-toggle="collapse" data-target="#navbarSupportedContent" aria-controls="navbarSupportedContent" aria-expanded="false" aria-label="Toggle navigation"> <span class="navbar-toggler-icon"></span> @@ -24,8 +24,6 @@ {% block content %}{% endblock %} </div> -<script src="https://code.jquery.com/jquery-3.3.1.slim.min.js" integrity="sha384-q8i/X+965DzO0rT7abK41JStQIAqVgRVzpbzo5smXKp4YfRvH+8abtTE1Pi6jizo" crossorigin="anonymous"></script> -<script src="https://stackpath.bootstrapcdn.com/bootstrap/4.3.1/js/bootstrap.min.js" integrity="sha384-JjSmVgyd0p3pXB1rRibZUAYoIIy6OrQ6VrjIEaFf/nJGzIxFDsf4x0xIM+B07jRM" crossorigin="anonymous"></script> <script src="https://cdnjs.cloudflare.com/ajax/libs/cytoscape/3.6.0/cytoscape.min.js" integrity="sha256-uZV2wRlscgr52q3Wb3Oew0rKCPsM3g4aBTv46sF4qzg=" crossorigin="anonymous"></script> </body> diff --git a/templates/sentences.html b/templates/sentences.html index c481817..f8da871 100644 --- a/templates/sentences.html +++ b/templates/sentences.html @@ -1,8 +1,9 @@ {% extends "layout.html" %} {% block content %} +<br> {{ sentences | safe }} - + {% endblock %} |