diff options
Diffstat (limited to 'server.py')
| -rwxr-xr-x | server.py | 54 |
1 files changed, 27 insertions, 27 deletions
@@ -16,10 +16,10 @@ import re import pytz app=Flask(__name__) +datadir="/export/ratspub/" app.config['SECRET_KEY'] = '#DtfrL98G5t1dC*4' -app.config['SQLALCHEMY_DATABASE_URI'] = 'sqlite:///userspub.sqlite' +app.config['SQLALCHEMY_DATABASE_URI'] = 'sqlite:///'+datadir+'userspub.sqlite' db = SQLAlchemy(app) -datadir="/export/ratspub/" # the sqlite database class users(db.Model): @@ -209,10 +209,10 @@ def search(): #create a folder for the search if ('email' in session): user_login=1 - os.makedirs("./user/"+str(session['email']+"/"+timeextension+"_0_"+genes_for_folder_name+marker),exist_ok=True) - session['user_folder'] = "./user/"+str(session['email']) + os.makedirs(datadir+"user/"+str(session['email']+"/"+timeextension+"_0_"+genes_for_folder_name+marker),exist_ok=True) + session['user_folder'] = datadir+"user/"+str(session['email']) user_folder=session['user_folder'] - session['path'] = "./user/"+str(session['email'])+"/"+timeextension+"_0_"+genes_for_folder_name+marker+"/"+timeextension + session['path'] = datadir+"user/"+str(session['email'])+"/"+timeextension+"_0_"+genes_for_folder_name+marker+"/"+timeextension percent=round(100/(len(genes)*6),1) # 6 categories snt_file=session['path']+"_snt" cysdata=open(session['path']+"_cy","w+") @@ -351,34 +351,34 @@ def search(): json_edges = json_edges[:-2] json_edges =json_edges+"]}" #write edges to txt file in json format - with open("json_edges.txt", 'w') as edgesjson: + with open(datadir+"edges.json", 'w') as edgesjson: edgesjson.write(json_edges) #write edges to txt file in json format also in user folder if (user_login == 1): - with open(user_folder+"/"+timeextension+"_0_"+genes_for_folder_name+marker+"/json_edges.txt", "w") as temp_file_edges: + with open(user_folder+"/"+timeextension+"_0_"+genes_for_folder_name+marker+"/edges.json", "w") as temp_file_edges: temp_file_edges.write(json_edges) #write nodes to txt file in json format - with open("json_nodes.txt", 'w') as nodesjson: + with open(datadir+"nodes.json", 'w') as nodesjson: #if (userlogin) == 1: nodesjson.write(json_nodes) #write nodes to txt file in json format also in user folder if ('email' in session): - with open("./user/"+str(session['email'])+"/"+timeextension+"_0_"+genes_for_folder_name+marker+"/json_nodes.txt", "w") as temp_file_nodes: + with open(datadir+"user/"+str(session['email'])+"/"+timeextension+"_0_"+genes_for_folder_name+marker+"/nodes.json", "w") as temp_file_nodes: temp_file_nodes.write(json_nodes) return Response(generate(genes, snt_file), mimetype='text/event-stream') @app.route("/tableview") def tableview(): - with open("json_nodes.txt") as jsonfile: + with open(datadir+"nodes.json") as jsonfile: jnodes = json.load(jsonfile) jedges ='' - file_edges = open('json_edges.txt', 'r') + file_edges = open(datadir+'edges.json', 'r') for line in file_edges.readlines(): if ':' not in line: nodata_temp = 1 else: nodata_temp = 0 - with open("json_edges.txt") as edgesjsonfile: + with open(datadir+"edges.json") as edgesjsonfile: jedges = json.load(edgesjsonfile) break genename=session['query'] @@ -397,16 +397,16 @@ def tableview(): @app.route("/tableview0") def tableview0(): - with open("json_nodes.txt") as jsonfile: + with open(datadir+"nodes.json") as jsonfile: jnodes = json.load(jsonfile) jedges ='' - file_edges = open('json_edges.txt', 'r') + file_edges = open(datadir+'edges.json', 'r') for line in file_edges.readlines(): if ':' not in line: nodata_temp = 1 else: nodata_temp = 0 - with open("json_edges.txt") as edgesjsonfile: + with open(datadir+"edges.json") as edgesjsonfile: jedges = json.load(edgesjsonfile) break genename=session['query'] @@ -425,11 +425,11 @@ def tableview0(): @app.route("/userarchive") def userarchive(): - if os.path.exists("./user/"+str(session['email'])) == False: + if os.path.exists(datadir+"user/"+str(session['email'])) == False: flash("Search history doesn't exist!") return render_template('index.html') if ('email' in session): - session['user_folder'] = "./user/"+str(session['email']) + session['user_folder'] = datadir+"user/"+str(session['email']) session_id=session['id'] def sorted_alphanumeric(data): convert = lambda text: int(text) if text.isdigit() else text.lower() @@ -458,14 +458,14 @@ def userarchive(): @app.route('/remove', methods=['GET', 'POST']) def remove(): remove_folder = request.args.get('remove_folder') - shutil.rmtree("./user/"+str(session['email']+"/"+remove_folder), ignore_errors=True) + shutil.rmtree(datadir+"user/"+str(session['email']+"/"+remove_folder), ignore_errors=True) return redirect(url_for('userarchive')) @app.route('/date', methods=['GET', 'POST']) def date(): select_date = request.args.get('selected_date') #open the cache folder for the user - tf_path="./user" + tf_path=datadir+"user" if ('email' in session): time_extension = str(select_date) time_extension = time_extension.split('_0_')[0] @@ -477,25 +477,25 @@ def date(): else: tf_path=tempfile.gettempdir() session['path']=tf_path+"/tmp" + ''.join(random.choice(string.ascii_letters) for x in range(6)) - with open(tf_path+"/"+str(session['email'])+"/"+select_date+"/json_edges.txt", "r") as archive_file: - with open("json_edges.txt", "w") as temp_file: + with open(tf_path+"/"+str(session['email'])+"/"+select_date+"/edges.json", "r") as archive_file: + with open(datadir+"edges.json", "w") as temp_file: for line in archive_file: temp_file.write(line) - with open(tf_path+"/"+str(session['email'])+"/"+select_date+"/json_nodes.txt", "r") as archive_file: - with open("json_nodes.txt", "w") as temp_file: + with open(tf_path+"/"+str(session['email'])+"/"+select_date+"/nodes.json", "r") as archive_file: + with open(datadir+"nodes.json", "w") as temp_file: for line in archive_file: temp_file.write(line) - with open("json_nodes.txt", "r") as jsonfile: + with open(datadir+"nodes.json", "r") as jsonfile: jnodes = json.load(jsonfile) jedges ='' - file_edges = open('json_edges.txt', 'r') + file_edges = open(datadir+'edges.json', 'r') for line in file_edges.readlines(): if ':' not in line: nodata_temp = 1 else: nodata_temp = 0 - with open("json_edges.txt") as edgesjsonfile: + with open(datadir+"edges.json") as edgesjsonfile: jedges = json.load(edgesjsonfile) break gene_list=[] @@ -665,4 +665,4 @@ def top150genes(): if __name__ == '__main__': db.create_all() - app.run(debug=True, port=4206) + app.run(debug=True, port=4200) |