diff options
Diffstat (limited to 'guix.scm')
| -rw-r--r-- | guix.scm | 8 |
1 files changed, 5 insertions, 3 deletions
diff --git a/guix.scm b/guix.scm index f2e54d4..2c42e85 100644 --- a/guix.scm +++ b/guix.scm @@ -7,12 +7,14 @@ ;; ;; Development shell: ;; -;; guix shell -L . -C -N -F edirect-25 genecup-gemini coreutils -- genecup --port 4201 +;; guix shell -L . -C -N -F --expose=$HOME/.config/gemini --share=/export3/PubMed edirect-25 genecup-gemini coreutils -- genecup --port 4201 ;; ;; In a shell you can run ;; -;; python3 -m unittest tests.test_network_esearch +;; guix shell -C -N -F -L . --expose=$HOME/.config/gemini --share=/export3/PubMed edirect-25 genecup-gemini +;; env EDIRECT_LOCAL_ARCHIVE=/export3/PubMed/Source python3 -m unittest tests.test_network_esearch ;; env EDIRECT_LOCAL_ARCHIVE=/export3/PubMed/Source python3 -m unittest tests.test_local_xfetch -v +;; env EDIRECT_LOCAL_ARCHIVE=/export3/PubMed/Source python3 -m unittest tests.test_network_gemini_ontology ;; ;; Note: API key is read from ~/.config/gemini/credentials ;; @@ -284,7 +286,7 @@ GeneCup with four gene symbols (gria1, crhr1, drd2, and penk).") go-github-com-surgebase-porter2 go-golang-org-x-sys go-golang-org-x-text)) - (propagated-inputs (list curl wget grep sed gawk coreutils findutils gzip unzip)) + (propagated-inputs (list curl wget grep sed gawk coreutils findutils gzip unzip xargs)) (inputs (list bash-minimal coreutils perl perl-xml-simple python)) (home-page "https://www.ncbi.nlm.nih.gov/books/NBK179288/") (synopsis "Tools for accessing the NCBI's set of databases") |