diff options
| -rwxr-xr-x | server.py | 2 |
1 files changed, 1 insertions, 1 deletions
diff --git a/server.py b/server.py index 2ce8720..d9e3551 100755 --- a/server.py +++ b/server.py @@ -162,7 +162,7 @@ def gene_gene(): query=request.args.get("gene") tmp_ggPMID=session['path']+"_ggPMID" os.system("esearch -db pubmed -query \"" + query + "\" | efetch -format uid |sort >" + tmp_ggPMID) - abstracts=os.popen("comm -1 -2 top_150_addiction_genes_uniq.pmid " + tmp_ggPMID + " |fetch-pubmed -path /run/media/hao/PubMed/Archive/ | xtract -pattern PubmedArticle -element MedlineCitation/PMID,ArticleTitle,AbstractText|sed \"s/-/ /g\"").read() + abstracts=os.popen("comm -1 -2 top_150_addiction_genes_uniq.pmid " + tmp_ggPMID + " |fetch-pubmed -path "+pubmed_path+ " | xtract -pattern PubmedArticle -element MedlineCitation/PMID,ArticleTitle,AbstractText|sed \"s/-/ /g\"").read() os.system("rm "+tmp_ggPMID) topGenes=dict() out=str() |