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authorPjotr Prins2024-06-22 04:27:44 -0500
committerPjotr Prins2024-06-22 04:27:44 -0500
commitfd0d852cc46ae5e23341358682e7d8e682c81414 (patch)
tree035fde0e6cfc08c066900a54ff601f01003d210d /templates
parenta223741881aadb73e75ed6d5d7d4e20dca1cda90 (diff)
downloadgenecup-fd0d852cc46ae5e23341358682e7d8e682c81414.tar.gz
Add footer and version info
Diffstat (limited to 'templates')
-rw-r--r--templates/about.html36
-rw-r--r--templates/layout.html15
2 files changed, 28 insertions, 23 deletions
diff --git a/templates/about.html b/templates/about.html
index bdf52f7..3cdefc5 100644
--- a/templates/about.html
+++ b/templates/about.html
@@ -7,25 +7,25 @@
         <h3> About GeneCup </h3>
         <hr>
 
-        <p>GeneCup searches PubMed to find abstracts containing genes of interest and keywords in the custom ontologies. 
-            The title and abstracts corresponding to the PMIDs are then retrieved from a 
-            <a href="https://dataguide.nlm.nih.gov/edirect/archive.html">local archive of the PubMed</a>. 
-            No limit on the date of publication is set. Each abstract is then broken down into sentences, 
-            which are then filtered by gene names and keywords. We also parse the GWAS catalog to obtain 
+        <p>GeneCup searches PubMed to find abstracts containing genes of interest and keywords in the custom ontologies.
+            The title and abstracts corresponding to the PMIDs are then retrieved from a
+            <a href="https://dataguide.nlm.nih.gov/edirect/archive.html">local archive of the PubMed</a>.
+            No limit on the date of publication is set. Each abstract is then broken down into sentences,
+            which are then filtered by gene names and keywords. We also parse the GWAS catalog to obtain
             genetics associations with the keywords of the custom ontology.
 
-        <p>A list of curated <a href="/ontology">addiction-related keywords</a> can be used to search 
-            addiction-related genes. We compiled the most studied 100 addiction related genes 
-            by searching 29,761 human genes against addiction related keywords. 
-            To ensure comprehensive coverage, gene alias obtained from NCBI gene database were included in the search. 
-            The results were extensively curated to remove over 900 alias that matched words 
-            that were not gene name or wrong genes. Some incorrect results remained because the same name 
-            also produced correct results. The resulting 61,000 sentences are archived localy and can be accessed 
-            via the <a href="/allTopGenes">Addiction Genes</a> link.  We also archived  5.3 million PMIDs 
-            associated with these gene for efficient search of query gene to addiction gene relations. 
-            We obtain 23,000 genetics associations with the addiction and psychiatric phenotypes from GWAS catalog. 
+        <p>A list of curated <a href="/ontology">addiction-related keywords</a> can be used to search
+            addiction-related genes. We compiled the most studied 100 addiction related genes
+            by searching 29,761 human genes against addiction related keywords.
+            To ensure comprehensive coverage, gene alias obtained from NCBI gene database were included in the search.
+            The results were extensively curated to remove over 900 alias that matched words
+            that were not gene name or wrong genes. Some incorrect results remained because the same name
+            also produced correct results. The resulting 61,000 sentences are archived localy and can be accessed
+            via the <a href="/allTopGenes">Addiction Genes</a> link.  We also archived  5.3 million PMIDs
+            associated with these gene for efficient search of query gene to addiction gene relations.
+            We obtain 23,000 genetics associations with the addiction and psychiatric phenotypes from GWAS catalog.
             These results are included in the search by default.
-            
+
         <p> We plan to update the local PubMed archive daily and the EBI GWAS catalog quarterly.
 
     </div>
@@ -37,9 +37,7 @@
 
 Cite: Gunturkun MH, Flashner E, Wang T, Mulligan MK, Williams RW, Prins P, Chen H. <a href="https://academic.oup.com/g3journal/article/12/5/jkac059/6548160" target=_new>GeneCup: mining PubMed and GWAS catalog for gene-keyword relationships.</a> G3 (Bethesda). 2022 May 6;12(5):jkac059. doi: 10.1093/g3journal/jkac059. PMID: 35285473; PMCID: PMC9073678.
 
-<p> <a href="https://github.com/chen42/ratspub"> Source code </a>
+<p> <a href="https://git.genenetwork.org/genecup/">Source code </a>
 
 
 {% endblock %}
-
-
diff --git a/templates/layout.html b/templates/layout.html
index 20dbcbe..814e5b6 100644
--- a/templates/layout.html
+++ b/templates/layout.html
@@ -4,7 +4,7 @@
     <meta charset="utf-8">
     <meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no">
     <meta http-equiv="X-UA-Compatible" content="ie=edge">
-	 
+
     <!-- Bootstrap CSS -->
     <link rel="stylesheet" href="https://stackpath.bootstrapcdn.com/bootstrap/4.3.1/css/bootstrap.min.css" integrity="sha384-ggOyR0iXCbMQv3Xipma34MD+dH/1fQ784/j6cY/iJTQUOhcWr7x9JvoRxT2MZw1T" crossorigin="anonymous">
     <script src="https://stackpath.bootstrapcdn.com/bootstrap/4.3.1/js/bootstrap.min.js" integrity="sha384-wfSDF2E50Y2D1uUdj0O3uMBJnjuUD4Ih7YwaYd1iqfktj0Uod8GCExl3Og8ifwB6" crossorigin="anonymous"></script>
@@ -20,7 +20,7 @@
   <div class="col-1">
 		<a href="/"><div class='img'><img src="/static/white_logo.png" class="img-fluid", style="width:60%"></div></a>
 	</div>
-  
+
   <a class="navbar-brand" href="/">GeneCup</a>
   <button class="navbar-toggler" type="button" data-toggle="collapse" data-target="#navbarSupportedContent" aria-controls="navbarSupportedContent" aria-expanded="false" aria-label="Toggle navigation">
     <span class="navbar-toggler-icon"></span>
@@ -95,10 +95,17 @@
 	{% block content %}{% endblock %}
 </div>
 
+</ hr>
+<div id="footer" align="right">
+  <a href="https://git.genenetwork.org/genecup/">Source code</a>
+  |
+  Cite <a href="https://academic.oup.com/g3journal/article/12/5/jkac059/6548160">GeneCup: mining PubMed and GWAS catalog for gene-keyword relationships. doi:10.1093/g3journal/jkac059. PMID: 35285473; PMCID: PMC9073678.</a>
+  |
+  Powered by Tensorflow on <a href="https://genenetwork.org/">GeneNetwork.org</a>
+</div>
+
 <script src="https://code.jquery.com/jquery-3.2.1.slim.min.js" integrity="sha384-KJ3o2DKtIkvYIK3UENzmM7KCkRr/rE9/Qpg6aAZGJwFDMVNA/GpGFF93hXpG5KkN" crossorigin="anonymous"></script>
 <script src="https://cdnjs.cloudflare.com/ajax/libs/popper.js/1.12.9/umd/popper.min.js" integrity="sha384-ApNbgh9B+Y1QKtv3Rn7W3mgPxhU9K/ScQsAP7hUibX39j7fakFPskvXusvfa0b4Q" crossorigin="anonymous"></script>
 <script src="https://maxcdn.bootstrapcdn.com/bootstrap/4.0.0/js/bootstrap.min.js" integrity="sha384-JZR6Spejh4U02d8jOt6vLEHfe/JQGiRRSQQxSfFWpi1MquVdAyjUar5+76PVCmYl" crossorigin="anonymous"></script>
 
 </body>
-
-