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| author | Hao Chen | 2019-05-21 05:35:29 -0500 |
|---|---|---|
| committer | Hao Chen | 2019-05-21 05:35:29 -0500 |
| commit | 3dba78248d81fc97d5347fa167828ba3a8f95cd8 (patch) | |
| tree | 63f684594bb395b86b556c3fff3d6e75ef06afe3 /templates | |
| parent | 7408927967d6828065cf704da1888e844c05f208 (diff) | |
| download | genecup-3dba78248d81fc97d5347fa167828ba3a8f95cd8.tar.gz | |
minor adj
Diffstat (limited to 'templates')
| -rw-r--r-- | templates/about.html | 3 | ||||
| -rw-r--r-- | templates/index.html | 16 |
2 files changed, 10 insertions, 9 deletions
diff --git a/templates/about.html b/templates/about.html index 4d944e9..ebd8554 100644 --- a/templates/about.html +++ b/templates/about.html @@ -2,7 +2,8 @@ {% extends "layout.html" %} {% block content %} -<h3> About RatsPub ...</h3> +<h3> About RatsPub </h3> +<hr> <p>RatsPub searches PubMed to find abstracts containing genes of interest and a list of curated addiction-related keywords. The abstracts corresponding to these returned PMIDs are then retrieve from a <a href="https://dataguide.nlm.nih.gov/edirect/archive.html">local archive of the PubMed</a>. No limit on the date of publication is set. Each abstract is then broken down into sentences, which are then filtered by gene names and keywords. diff --git a/templates/index.html b/templates/index.html index 7df2a4e..f9a4fc1 100644 --- a/templates/index.html +++ b/templates/index.html @@ -7,21 +7,21 @@ <table> <tr><td > -<p> - RatsPub searches PubMed to find <i>sentences</i> that contain the query terms (i.e., gene symbols) and <a href="https://github.com/chen42/RatsPub/blob/master/ratspub_keywords.py">drug addiction-related keywords</a>. These gene-keyword relationships are presented as an interactive graph that can efficiently answer the question <b>"What do we know about these genes and addiction?". </b> Data from <a href="https://www.ebi.ac.uk/gwas/">EBI GWAS catalog </a>are also included in the search to better answer this question. + +<p> RatsPub searches PubMed to find <i>sentences</i> that contain the query terms (i.e., gene symbols) and <a href="https://github.com/chen42/RatsPub/blob/master/ratspub_keywords.py">drug addiction-related keywords</a>. These gene-keyword relationships are presented as an interactive graph that can efficiently answer the question <b>"What do we know about these genes and addiction?". </b> Data from <a href="https://www.ebi.ac.uk/gwas/">EBI GWAS catalog </a>are also included in the search to better answer this question. <p> The graph has many interactive elements. For example, clicking gene names will launch a new search for sentences containing the target gene and 200 addiction-related genes. These results help to answer the question <b>"Are there genes that can link my gene of interest to addiction?" </b> + +<p>Up to 100 gene symbols can be searched at a time. Gene symbols can be separated by either a space or a semicolon. Gene alias will <i>not</i> be automatically included because the large number of false matches associated with gene synonyms retrieved from databases. </td> <td > <div class='img'><img src="/static/ratspub.png" class="img-fluid"> - </td></tr> - <tr><td colspan=2> - - Up to 100 gene symbols can be searched at a time. Gene symbols can be separated by either a space or a semicolon. Gene alias will <i>not</i> be automatically included because the large number of false matches associated with gene synonyms retrieved from databases. - </td></tr></table> + </td> + </tr> +</table> <p> - <b>Example</b>: Rgma Nrxn3; Chrna3 + <b>Example</b>: Rgma Nrxn3 Chrna3 <br> <form action="/progress"> |