showing sentences

1 files changed, 23 insertions, 6 deletions

diff --git a/server.py b/server.py
index 6a28e0b..4eaf911 100644
--- a/server.py
+++ b/server.py
@@ -15,6 +15,8 @@ def home():
 
 @app.route("/search")
 def search():
+    global all_sentences 
+    all_sentences=str()
     genes=request.args.get('query')
     genes=genes.replace(",", " ")
     genes=genes.replace(";", " ")
@@ -23,14 +25,29 @@ def search():
     edges=str()
     for  gene in genes:
         nodes+="{ data: { id: '" + gene +  "', nodecolor:'#FADBD8', fontweight:700} },\n"
-        tmp0=gene_addiction(gene)
-        e0=generate_edges(tmp0)
-        tmp1=gene_functional(gene)
-        e1=generate_edges(tmp1)
-        tmp2=gene_anatomical(gene)
-        e2=generate_edges(tmp2)
+        sent0=gene_addiction(gene)
+        e0=generate_edges(sent0)
+        sent1=gene_functional(gene)
+        e1=generate_edges(sent1)
+        sent2=gene_anatomical(gene)
+        e2=generate_edges(sent2)
         edges+=e0+e1+e2
+        all_sentences+=sent0+sent1+sent2
     return render_template('cytoscape.html', elements=nodes+edges)
 
+@app.route("/sentences")
+def sentences():
+    edge=request.args.get('edgeID')
+    (gene0, cat0)=edge.split("|")
+    print (gene0 + cat0)
+    out=str()
+    for sent in all_sentences.split("\n"):
+        #print (sent) 
+        if len(sent.strip())!=0:
+           (gene,nouse,cat, pmid, text)=sent.split("\t") 
+           if (gene == gene0 and cat == cat0) :
+               out+= "<li> "+ text + " <a href=\"https://www.ncbi.nlm.nih.gov/pubmed/?term=" + pmid +"\" target=_new>PMID:"+pmid+"<br></a>"
+    return render_template('sentences.html', sentences=out)
+
 if __name__ == '__main__':
     app.run(debug=True)