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| author | Hao Chen | 2019-05-08 09:18:21 -0500 |
|---|---|---|
| committer | Hao Chen | 2019-05-08 09:18:21 -0500 |
| commit | cd948b1ccf6781c17c9e4b4899ada9d654f16e83 (patch) | |
| tree | dd49109cf838756a925c98e9207fada06d26792d /ratspub.py | |
| parent | 30a9a40ae3170f0a13efd394ac12e297d3eda03d (diff) | |
| download | genecup-cd948b1ccf6781c17c9e4b4899ada9d654f16e83.tar.gz | |
showing sentences
Diffstat (limited to 'ratspub.py')
| -rwxr-xr-x | ratspub.py | 8 |
1 files changed, 4 insertions, 4 deletions
diff --git a/ratspub.py b/ratspub.py index c853fd2..0670726 100755 --- a/ratspub.py +++ b/ratspub.py @@ -26,7 +26,7 @@ def getSentences(query, gene): for sent in sentences: if findWholeWord(gene)(sent): sent=re.sub(r'\b(%s)\b' % gene, r'<b>\1</b>', sent, flags=re.I) - out+=pmid+"\t"+sent+"<br>\n" + out+=pmid+"\t"+sent+"\n" return(out) def gene_addiction(gene): @@ -87,7 +87,7 @@ def generate_edges(data): edgeCnts[edgeID]=1 for edgeID in edgeCnts: (source,target)=edgeID.split("|") - json0+="{ data: { id: \'" + edgeID + "\', source: \'" + source + "\', target: '" + target + "\', sentCnt: '" + str(edgeCnts[edgeID]) + "' } },\n" + json0+="{ data: { id: \'" + edgeID + "\', source: \'" + source + "\', target: '" + target + "\', sentCnt: '" + str(edgeCnts[edgeID]) + "', url:'/sentences?edgeID=" + edgeID + "' } },\n" return(json0) @@ -103,9 +103,9 @@ addiction=undic(addiction_d) drug_d = {"alcohol":"alcohol|alcoholism", "nicotine":"smoking|nicotine|tobacco", - "amphetamine":"methamphetamine|amphetamine|METH", "cocaine":"cocaine", "opioid":"opioid|fentanyl|oxycodone|oxycontin|heroin|morphine", + "amphetamine":"methamphetamine|amphetamine|METH", "cannabinoid":"marijuana|cannabinoid|tetrahydrocannabinol|thc|thc-9" } drug=undic(drug_d) @@ -121,10 +121,10 @@ brain_d ={"cortex":"cortex|pfc|vmpfc|il|pl|prelimbic|infralimbic", brain="cortex|accumbens|striatum|amygadala|hippocampus|tegmental|mesolimbic|infralimbic|prelimbic" function_d={"plasticity":"LTP|LTD|plasticity|synaptic|epsp|epsc", - "neurotransmission": "neurotransmission|glutamate|GABA|cholinergic|serotoninergic", "signalling":"signalling|phosphorylation|glycosylation", # "regulation":"increased|decreased|regulated|inhibited|stimulated", "transcription":"transcription|methylation|histone|ribosome", + "neurotransmission": "neurotransmission|glutamate|GABA|cholinergic|serotoninergic", } function=undic(function_d) |