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authorHao Chen2019-05-17 19:08:21 -0500
committerHao Chen2019-05-17 19:08:21 -0500
commita6376a94e137eea0e0d326d6524fe9c2177b1b34 (patch)
treed4e9f3ed40f9a24925e943a7c9b961680f30ebd5 /ratspub.py
parent7ca139dfe40b70db4f553d09b7010712c33207fe (diff)
downloadgenecup-a6376a94e137eea0e0d326d6524fe9c2177b1b34.tar.gz
sep the keywords out
Diffstat (limited to 'ratspub.py')
-rwxr-xr-xratspub.py11
1 files changed, 9 insertions, 2 deletions
diff --git a/ratspub.py b/ratspub.py
index 64e750a..0cc5d8a 100755
--- a/ratspub.py
+++ b/ratspub.py
@@ -2,11 +2,10 @@
from nltk.tokenize import sent_tokenize
import os
import re
-import ratspub_keywords
+from ratspub_keywords import *
global function_d, brain_d, drug_d, addiction_d, brain_query_term, pubmed_path
-pubmed_path="/media/hao/2d554499-6c5b-462d-85f3-5c49b25f4ac8/PubMed/Archive"
## turn dictionary (synonyms) to regular expression
def undic(dic):
@@ -79,3 +78,11 @@ n1=generate_nodes(addiction_d, 'addiction')
n2=generate_nodes(drug_d, 'drug')
n3=generate_nodes(brain_d, 'brain')
default_nodes=n0+n1+n2+n3
+
+
+host= os.popen('hostname').read().strip()
+if host=="x1":
+ pubmed_path="/run/media/hao/PubMed/Archive/"
+elif host=="hchen3":
+ pubmed_path="/media/hao/2d554499-6c5b-462d-85f3-5c49b25f4ac8/PubMed/Archive"
+