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| author | Pjotr Prins | 2026-04-05 11:15:23 +0200 |
|---|---|---|
| committer | Pjotr Prins | 2026-04-05 11:15:23 +0200 |
| commit | 433e5670464565948ead89097190b303168e27f0 (patch) | |
| tree | 5172e1c30e117d8e8503010c14894c3a2414594a /README.md | |
| parent | 45be8b7f1e4bc046fd2e5b1a6bdf4c6db4057788 (diff) | |
| download | genecup-433e5670464565948ead89097190b303168e27f0.tar.gz | |
Settings now use edirect updated EDIRECT_LOCAL_ARCHIVE
Diffstat (limited to 'README.md')
| -rw-r--r-- | README.md | 4 |
1 files changed, 2 insertions, 2 deletions
diff --git a/README.md b/README.md index 9e52138..749a9c5 100644 --- a/README.md +++ b/README.md @@ -45,7 +45,7 @@ Following the instruction provided by NCBI: https://www.nlm.nih.gov/dataguide/ed Point environment variables to this dir and run in the local source tree: ``` -env EDIRECT_PUBMED_ARCHIVE=/export/PubMed `guix build -L . genecup-gemini`/bin/genecup --port 4201 +env EDIRECT_LOCAL_ARCHIVE=/export3/PubMed/Source `guix build -L . genecup-gemini`/bin/genecup --port 4201 ``` You can run from a proper container: @@ -57,7 +57,7 @@ guix shell -L ~/guix-bioinformatics -L . -C -N -F genecup-gemini -- genecup --po Environment variables used: ``` -EDIRECT_PUBMED_ARCHIVE: PubMed datadir (defaults to built-in minipubmed) +EDIRECT_LOCLA_ARCHIVE: PubMed datadir (defaults to built-in minipubmed) GENECUP_DATADIR: SQLITE DB directory (default .) NLTK_DATA: punkt_tab directory (defaults to built-in nltk-punkt) TMPDIR (default /tmp) |