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| author | Hao Chen | 2019-05-17 19:10:45 -0500 |
|---|---|---|
| committer | Hao Chen | 2019-05-17 19:10:45 -0500 |
| commit | 8fec258c37cf38c4af2ffe64d67e4f3fc121ad3b (patch) | |
| tree | 6409578f3f0e76d2cb175b8daac6951d71ec7d1d | |
| parent | eb51746ce69fb43450b6896e4a71e5052df51115 (diff) | |
| download | genecup-8fec258c37cf38c4af2ffe64d67e4f3fc121ad3b.tar.gz | |
get gene names
| -rw-r--r-- | extract_gene_symb_name_from_ncbi_gene_info.sh | 2 |
1 files changed, 1 insertions, 1 deletions
diff --git a/extract_gene_symb_name_from_ncbi_gene_info.sh b/extract_gene_symb_name_from_ncbi_gene_info.sh index 0f54b1a..4d3118b 100644 --- a/extract_gene_symb_name_from_ncbi_gene_info.sh +++ b/extract_gene_symb_name_from_ncbi_gene_info.sh @@ -1,4 +1,4 @@ #!/bin/bash #-e "s/\(|\)/ /g" -e "s/\[|\]/ /g" -grep ^9606 ~/Downloads/gene_info |grep -v ^LOC|grep -v -i pseudogene |cut -f 3,5,12|sed -e "s/\t-//" -e "s/\t/|/2" -e "s/\t-//" -e "s/\t/\|/" -e "s/(\|)\|\[\|\]\|{\|}/ /g" | sort >ncbi_gene_symb_syno_name_txid9606.txt +grep ^9606 ~/Downloads/gene_info |cut -f 3,5,12|grep -v ^LOC|grep -v -i pseudogene |sed -e "s/\t-//" -e "s/\t/|/2" -e "s/\t-//" -e "s/\t/\|/" -e "s/(\|)\|\[\|\]\|{\|}/ /g" | sort >ncbi_gene_symb_syno_name_txid9606.txt |