diff options
Diffstat (limited to 'sourcecodes/test_set_predictions.php')
| -rw-r--r-- | sourcecodes/test_set_predictions.php | 140 |
1 files changed, 90 insertions, 50 deletions
diff --git a/sourcecodes/test_set_predictions.php b/sourcecodes/test_set_predictions.php index b626dea3..ca76927b 100644 --- a/sourcecodes/test_set_predictions.php +++ b/sourcecodes/test_set_predictions.php @@ -1,4 +1,11 @@ -<?php +<head> +<meta http-equiv='cache-control' content='no-cache'> +<meta http-equiv='expires' content='0'> +<meta http-equiv='pragma' content='no-cache'> +<script src="./scripts/d3.v4.min.js"></script> +<script src="./scripts/create_table.js"></script> + +<?php include("header_new.inc"); include("header_batchsearch.inc"); include("input_validate.php"); @@ -6,47 +13,50 @@ if($_GET["My_key"]!="") $keyval=valid_keyval($_GET["My_key"]); if($_POST["My_key"]!="") $keyval=valid_keyval($_POST["My_key"]); -$searchID=""; -$UploadValue="NO"; -$TextFile=$HTTP_POST_FILES["MyFile"]["name"]; -$TextinFile="./data/".$keyval."ts_upload.txt"; ?> +</head> <?php -if(isset($HTTP_POST_VARS["searchkey"])) +$searchID=""; +$UploadValue="NO"; +$TextFile=$_FILES["MyFile"]["name"]; +//$TextinFile="./data/".$keyval."ts_upload.txt"; +$TextinFile="/var/lib/genenet/bnw/".$keyval."ts_upload.txt"; + +if(isset($_POST["searchkey"])) { - $searchID=$HTTP_POST_VARS["searchkey"]; + $searchID=$_POST["searchkey"]; } -if(isset($HTTP_POST_VARS["MyUpload"])) +if(isset($_POST["MyUpload"])) { - $UploadValue=$HTTP_POST_VARS["MyUpload"]; + $UploadValue=$_POST["MyUpload"]; if ($UploadValue=="YES") { if($TextFile!="") - { - $sta=move_uploaded_file($HTTP_POST_FILES['MyFile']['tmp_name'],$TextinFile); + { + $sta=move_uploaded_file($_FILES['MyFile']['tmp_name'],$TextinFile); if(!$sta) - { + { echo "<script type='text/javascript'> window.alert ('Sorry, error uploading $TextFile.')</script>\ "; flush(); exit(); - } + } else - { + { $searchID=file_get_contents("$TextinFile"); //unlink($TextinFile); - } + } - } + } else - { + { echo "<script type='text/javascript'> window.alert ('Sorry, please select upload file.')</script>"; - } + } } } @@ -55,9 +65,7 @@ if(isset($HTTP_POST_VARS["MyUpload"])) <!-- Site navigation menu --> <ul class="navbar2"> - <li><p>Network ID:<br><?php print($keyval);?></p></li> -</ul> -<ul class="navbar"> + <li class="noHover"><p>Network ID:<br><?php print($keyval);?></p></li> <li><a href="javascript:void(0);" NAME="Network" title="Network" onClick=window.open("layout.php?My_key=<?php print($keyval);?>","_self");>Return to network</a> <li><a href="javascript:void(0);" @@ -70,39 +78,55 @@ if(isset($HTTP_POST_VARS["MyUpload"])) <!-- Main content --> <?php - $filename1="./data/".$keyval."ts_upload.txt"; - $filename2="./data/".$keyval."ts_output.txt"; -if(file_exists($filename1)) + // $filename1="./data/".$keyval."ts_upload.txt"; + //$filename2="./data/".$keyval."ts_output.txt"; + $dir="/var/lib/genenet/bnw/"; + $filename1=$keyval."ts_upload.txt"; + $filename2=$keyval."ts_output.txt"; +$plotly_file=$keyval."ts_plotly.html"; +//$plotly_file_local="./data/".$keyval."ts_plotly.html"; +//$pred_file_local="./data/".$keyval."ts_output.txt"; + + +if(file_exists($dir.$filename1)) {?> <br> -Calculation submitted. -<br> -<a href="cv_predictions.php?My_key=<?php print($keyval);?>">Click to return to cross-validation and predictions menu</a> +<a class=button3 href="cv_predictions.php?My_key=<?php print($keyval);?>">Calculation submitted. Click here to return to cross-validation and predictions menu.</a> <br> <?php } -else if(file_exists($filename2)) - {?> - <br> - <h2> <a href=<?php $d="./data/".$keyval."ts_output.txt"; print($d);?>>View predictions</a></h2> -<?php - $plotly_file="./data/".$keyval."ts_plotly.html"; - if(file_exists($plotly_file)) - {?> - <div> - <object type="text/html" data=<?php print($plotly_file);?> width="800" height="500" > +else if(file_exists($dir.$plotly_file)) + { + $table_text = json_encode(file("file://".$dir.$filename2)); +?> +<div> + <object width="800" height="500" data=<?php include($dir.$plotly_file)?> </object> </div> - <?php - }?> - <br> + <div class="d3_table" id="table_div1"> + <script type="text/javascript"> + d3.text("", function(error,raw) { + var dsv=d3.dsvFormat("\t") + var data1 = <?php echo $table_text;?>; + var data2 = data1.join(""); + var data=dsv.parse(data2) + var caption_text=data.pop() + if (error) throw error; + tabulate_caption("#table_div1",data,caption_text.CaseRow); + }); +</script> +</div> + <a class=button2 href=<?php print("reroute.php?".$filename2);?>>Download predictions</a> +<br> +<br> + <h3>Make a new set of predictions by submitting data file below</h3> -<FORM name="key_search" enctype="multipart/form-data" ACTION="test_set_predictions.php" METHOD=POST> +<FORM name="key_search" id="in_form" enctype="multipart/form-data" ACTION="test_set_predictions.php" METHOD=POST> <table> <tr> <td> -<INPUT style="background-color:#FFFFFF;color:#0000FF" type="file" name="MyFile" size=45 > -<INPUT TYPE="submit" value=" Submit " onclick="return Upload();"> +<INPUT style="background-color:#FFFFFF;color:#0000FF" type="file" name="MyFile" id="MyFile_id" class="inputfile" onchange="upload_submit()"> +<label for="MyFile_id">Choose a file. . .</label> <INPUT TYPE="hidden" NAME="My_key" value=<?php print($keyval) ?> > <INPUT TYPE="hidden" name="MyUpload" value="NO"> </td> @@ -116,7 +140,18 @@ else if(file_exists($filename2)) </tr> </table> </FORM> +<br> +<br> </div> +<script> + function upload_submit() { + Upload(); + document.getElementById("in_form").submit(); + } +</script> + <br> + + <?php } else { ?> @@ -124,12 +159,9 @@ else if(file_exists($filename2)) To make prediction for several test cases, upload a file containing the test cases. <br> <br> - <FORM name="key_search" enctype="multipart/form-data" ACTION="test_set_predictions.php" METHOD=POST> -<table> -<tr> -<td> -<INPUT style="background-color:#FFFFFF;color:#0000FF" type="file" name="MyFile" size=45 > -<INPUT TYPE="submit" value=" Submit " onclick="return Upload();"> + <FORM name="key_search" id="in_form2" enctype="multipart/form-data" ACTION="test_set_predictions.php" METHOD=POST> +<INPUT style="background-color:#FFFFFF;color:#0000FF" type="file" name="MyFile" id="MyFile_id2" class="inputfile" onchange="upload_submit2()"> +<label for="MyFile_id2">Choose a file . . .</label> <INPUT TYPE="hidden" NAME="My_key" value=<?php print($keyval) ?> > <INPUT TYPE="hidden" name="MyUpload" value="NO"> </td> @@ -144,6 +176,13 @@ else if(file_exists($filename2)) </table> </FORM> </div> +<script> + function upload_submit2() { + Upload(); + document.getElementById("in_form2").submit(); + } +</script> + <br> <?php @@ -153,7 +192,8 @@ if($searchID!="") { if($UploadValue=="NO") { - $fpdata = fopen("./data/".$keyval."ts_input.txt","w"); + // $fpdata = fopen("./data/".$keyval."ts_input.txt","w"); + $fpdata = fopen($dir.$keyval."ts_upload.txt","w"); fwrite($fpdata,$searchID); } $command = './run_scripts/run_test_set '.$keyval; |