GENENET8 update

author: ziejd2 2021-02-24 14:36:59 -0600
committer: ziejd2 2021-02-24 14:36:59 -0600
commit: 25b843f6bbacb1937bdb960777b73acbece64115 (patch)
tree: 88645b9d1d8a0eea19d7229555bf8805571bc8b7 /sourcecodes/test_set_predictions.php
parent: 33cedf36248f616aa37d1462c69a4a3058a5d92e (diff)
download: BNW-25b843f6bbacb1937bdb960777b73acbece64115.tar.gz
1 files changed, 90 insertions, 50 deletions
diff --git a/sourcecodes/test_set_predictions.php b/sourcecodes/test_set_predictions.php
index b626dea3..ca76927b 100644
--- a/sourcecodes/test_set_predictions.php
+++ b/sourcecodes/test_set_predictions.php
@@ -1,4 +1,11 @@
-<?php 
+<head>
+<meta http-equiv='cache-control' content='no-cache'>
+<meta http-equiv='expires' content='0'>
+<meta http-equiv='pragma' content='no-cache'>
+<script src="./scripts/d3.v4.min.js"></script>
+<script src="./scripts/create_table.js"></script>
+
+<?php
 include("header_new.inc");
 include("header_batchsearch.inc");
 include("input_validate.php");
@@ -6,47 +13,50 @@ if($_GET["My_key"]!="")
   $keyval=valid_keyval($_GET["My_key"]);
 if($_POST["My_key"]!="")
   $keyval=valid_keyval($_POST["My_key"]);
-$searchID="";
-$UploadValue="NO";
-$TextFile=$HTTP_POST_FILES["MyFile"]["name"];
-$TextinFile="./data/".$keyval."ts_upload.txt";
 ?>
+</head>
 
 <?php
-if(isset($HTTP_POST_VARS["searchkey"]))
+$searchID="";
+$UploadValue="NO";
+$TextFile=$_FILES["MyFile"]["name"];
+//$TextinFile="./data/".$keyval."ts_upload.txt";
+$TextinFile="/var/lib/genenet/bnw/".$keyval."ts_upload.txt";
+
+if(isset($_POST["searchkey"]))
   {
-    $searchID=$HTTP_POST_VARS["searchkey"];
+    $searchID=$_POST["searchkey"];
 
   }
 
-if(isset($HTTP_POST_VARS["MyUpload"]))
+if(isset($_POST["MyUpload"]))
   {
-    $UploadValue=$HTTP_POST_VARS["MyUpload"];
+    $UploadValue=$_POST["MyUpload"];
     if ($UploadValue=="YES")
       {
         if($TextFile!="")
-	  {
-            $sta=move_uploaded_file($HTTP_POST_FILES['MyFile']['tmp_name'],$TextinFile);
+          {
+            $sta=move_uploaded_file($_FILES['MyFile']['tmp_name'],$TextinFile);
             if(!$sta)
-	      {
+              {
                  echo "<script type='text/javascript'> window.alert ('Sorry, error uploading $TextFile.')</script>\
 ";
                  flush();
                  exit();
-	      }
+              }
             else
-	      {
+              {
                 $searchID=file_get_contents("$TextinFile");
                 //unlink($TextinFile);
 
-	      }
+              }
 
-	  }
+          }
 
        else
-	 {
+         {
            echo "<script type='text/javascript'> window.alert ('Sorry, please select upload file.')</script>";
-	 }
+         }
       }
   }
 
@@ -55,9 +65,7 @@ if(isset($HTTP_POST_VARS["MyUpload"]))
 
 <!-- Site navigation menu -->
 <ul class="navbar2">
-  <li><p>Network ID:<br><?php print($keyval);?></p></li>
-</ul>
-<ul class="navbar">
+  <li class="noHover"><p>Network ID:<br><?php print($keyval);?></p></li>
   <li><a href="javascript:void(0);"
   NAME="Network" title="Network" onClick=window.open("layout.php?My_key=<?php print($keyval);?>","_self");>Return to network</a>
   <li><a href="javascript:void(0);"
@@ -70,39 +78,55 @@ if(isset($HTTP_POST_VARS["MyUpload"]))
 <!-- Main content -->
 
 <?php
-  $filename1="./data/".$keyval."ts_upload.txt";
-  $filename2="./data/".$keyval."ts_output.txt";
-if(file_exists($filename1))
+  //  $filename1="./data/".$keyval."ts_upload.txt";
+  //$filename2="./data/".$keyval."ts_output.txt";
+  $dir="/var/lib/genenet/bnw/";
+  $filename1=$keyval."ts_upload.txt";
+  $filename2=$keyval."ts_output.txt";
+$plotly_file=$keyval."ts_plotly.html";
+//$plotly_file_local="./data/".$keyval."ts_plotly.html";
+//$pred_file_local="./data/".$keyval."ts_output.txt";
+
+
+if(file_exists($dir.$filename1))
   {?>
 <br>
-Calculation submitted.
-<br>
-<a href="cv_predictions.php?My_key=<?php print($keyval);?>">Click to return to cross-validation and predictions menu</a>
+<a class=button3 href="cv_predictions.php?My_key=<?php print($keyval);?>">Calculation submitted. Click here to return to cross-validation and predictions menu.</a>
 <br>
 <?php
   }
-else if(file_exists($filename2))
-  {?>
-  <br>
-  <h2> <a href=<?php $d="./data/".$keyval."ts_output.txt"; print($d);?>>View predictions</a></h2>
-<?php
-   $plotly_file="./data/".$keyval."ts_plotly.html";
-   if(file_exists($plotly_file))
-     {?>
-     <div>
-	 <object type="text/html" data=<?php print($plotly_file);?> width="800" height="500" >
+else if(file_exists($dir.$plotly_file))
+  {
+  $table_text = json_encode(file("file://".$dir.$filename2));
+?>
+<div>
+         <object width="800" height="500" data=<?php include($dir.$plotly_file)?>
          </object>
      </div>
- <?php
-      }?>    
-  <br>
+     <div class="d3_table" id="table_div1">
+     <script type="text/javascript">
+       d3.text("", function(error,raw) {
+        var dsv=d3.dsvFormat("\t")
+	var data1 = <?php echo $table_text;?>;
+	var data2 = data1.join("");
+        var data=dsv.parse(data2)
+        var caption_text=data.pop()
+        if (error) throw error;
+        tabulate_caption("#table_div1",data,caption_text.CaseRow);
+      });
+</script>
+</div>
+  <a class=button2 href=<?php print("reroute.php?".$filename2);?>>Download predictions</a>
+<br>
+<br>
+
 <h3>Make a new set of predictions by submitting data file below</h3>
-<FORM name="key_search" enctype="multipart/form-data" ACTION="test_set_predictions.php" METHOD=POST>
+<FORM name="key_search" id="in_form" enctype="multipart/form-data" ACTION="test_set_predictions.php" METHOD=POST>
 <table>
 <tr>
 <td>
-<INPUT style="background-color:#FFFFFF;color:#0000FF" type="file" name="MyFile" size=45 >
-<INPUT TYPE="submit" value="  Submit  " onclick="return Upload();">
+<INPUT style="background-color:#FFFFFF;color:#0000FF" type="file" name="MyFile" id="MyFile_id" class="inputfile" onchange="upload_submit()">
+<label for="MyFile_id">Choose a file. . .</label>
 <INPUT TYPE="hidden" NAME="My_key" value=<?php print($keyval) ?> >
 <INPUT TYPE="hidden" name="MyUpload" value="NO">
 </td>
@@ -116,7 +140,18 @@ else if(file_exists($filename2))
 </tr>
 </table>
 </FORM>
+<br>
+<br>
 </div>
+<script>
+ function upload_submit() {
+       Upload();
+       document.getElementById("in_form").submit();
+     }
+</script>
+  <br>
+
+
   <?php
    } else {
 ?>
@@ -124,12 +159,9 @@ else if(file_exists($filename2))
   To make prediction for several test cases, upload a file containing the test cases.
 <br>
 <br>
-    <FORM name="key_search" enctype="multipart/form-data" ACTION="test_set_predictions.php" METHOD=POST>
-<table>
-<tr>
-<td>
-<INPUT style="background-color:#FFFFFF;color:#0000FF" type="file" name="MyFile" size=45 >
-<INPUT TYPE="submit" value="  Submit  " onclick="return Upload();">
+    <FORM name="key_search" id="in_form2" enctype="multipart/form-data" ACTION="test_set_predictions.php" METHOD=POST>
+<INPUT style="background-color:#FFFFFF;color:#0000FF" type="file" name="MyFile" id="MyFile_id2" class="inputfile" onchange="upload_submit2()">
+<label for="MyFile_id2">Choose a file . . .</label>
 <INPUT TYPE="hidden" NAME="My_key" value=<?php print($keyval) ?> >
 <INPUT TYPE="hidden" name="MyUpload" value="NO">
 </td>
@@ -144,6 +176,13 @@ else if(file_exists($filename2))
 </table>
 </FORM>
 </div>
+<script>
+   function upload_submit2() {
+      Upload();
+      document.getElementById("in_form2").submit();
+    }
+</script>
+
 <br>
 
 <?php
@@ -153,7 +192,8 @@ if($searchID!="")
 {
   if($UploadValue=="NO")
     {
-      $fpdata = fopen("./data/".$keyval."ts_input.txt","w");
+      //      $fpdata = fopen("./data/".$keyval."ts_input.txt","w");
+      $fpdata = fopen($dir.$keyval."ts_upload.txt","w");
       fwrite($fpdata,$searchID);
     }
   $command = './run_scripts/run_test_set '.$keyval;
author	ziejd2	2021-02-24 14:36:59 -0600
committer	ziejd2	2021-02-24 14:36:59 -0600
commit	25b843f6bbacb1937bdb960777b73acbece64115 (patch)
tree	88645b9d1d8a0eea19d7229555bf8805571bc8b7 /sourcecodes/test_set_predictions.php
parent	33cedf36248f616aa37d1462c69a4a3058a5d92e (diff)
download	BNW-25b843f6bbacb1937bdb960777b73acbece64115.tar.gz