diff options
Diffstat (limited to 'sourcecodes/data/old/example_sci_bk')
25 files changed, 1508 insertions, 0 deletions
diff --git a/sourcecodes/data/old/example_sci_bk/Lluban.txt b/sourcecodes/data/old/example_sci_bk/Lluban.txt new file mode 100644 index 00000000..38108f00 --- /dev/null +++ b/sourcecodes/data/old/example_sci_bk/Lluban.txt @@ -0,0 +1,15 @@ +From To +Gene1 Genotype +Gene2 Genotype +Gene3 Genotype +Phenotype Genotype +Gene1 Genotype +Gene2 Genotype +Gene3 Genotype +Phenotype Gene1 +Phenotype Gene2 +Phenotype Gene3 +Phenotype Genotype +Phenotype Gene1 +Phenotype Gene2 +Phenotype Gene3 diff --git a/sourcecodes/data/old/example_sci_bk/Llucontinuous_input.txt b/sourcecodes/data/old/example_sci_bk/Llucontinuous_input.txt new file mode 100644 index 00000000..79295d7e --- /dev/null +++ b/sourcecodes/data/old/example_sci_bk/Llucontinuous_input.txt @@ -0,0 +1,503 @@ +Genotype Gene3 Gene2 Phenotype Gene1 +2 1 1 1 1 +2 -1.0008 -0.44837 0.21808 -1.196 +1 -0.29368 -0.53043 -1.0893 -0.10136 +2 0.70835 0.72886 -0.18098 -0.42907 +1 0.63703 0.86428 1.7013 0.1425 +1 -1.2402 -0.69712 -1.7002 -0.71634 +1 -1.1952 0.27155 -0.79413 -1.0965 +2 0.62914 0.94265 1.8385 0.6135 +1 -1.91 -2.379 -3.1094 -1.0924 +2 -0.83436 -0.90968 -1.3598 1.335 +1 0.15685 0.4766 1.2891 -1.3309 +2 0.7047 1.0623 1.9811 1.2821 +1 0.59747 -0.023123 0.88555 -0.8844 +1 -1.0557 -1.5548 -1.3016 -0.77687 +2 1.5206 2.0289 0.90366 1.8089 +1 0.65525 -0.47226 -1.1824 0.41863 +2 -0.39262 0.382 -0.64829 0.40947 +2 0.14966 0.22972 0.33797 0.69647 +1 -1.8836 -0.68534 -0.99941 -0.78961 +1 0.48181 0.01241 1.2145 0.16835 +2 1.4673 2.0438 2.4674 2.5234 +1 -1.3242 -0.80218 -1.6446 -0.31044 +1 -1.2471 -2.0351 -1.0296 -1.937 +1 0.23695 -0.01724 -0.32851 -0.16484 +1 -0.13986 -0.6065 -0.8491 -0.95538 +2 0.90888 1.0365 2.7222 1.3507 +1 -0.30556 -1.1546 -0.86033 -2.2006 +2 0.5391 0.99532 0.96947 1.1575 +2 1.1235 0.37982 0.64439 0.94362 +2 1.7073 1.9303 2.8018 1.9158 +1 -0.20553 -0.074104 -0.50073 -1.0697 +1 -0.27415 0.23076 -0.27564 -0.11286 +1 -1.304 -1.1213 -0.71793 -1.3462 +2 0.54315 0.55846 0.87411 1.2432 +1 -1.0659 -0.38067 -1.4372 -2.0927 +1 0.21278 -1.0115 -1.0984 -0.72751 +1 -2.9061 -1.3118 -3.8372 -2.0448 +2 -0.69608 -0.61145 -1.0037 0.12181 +1 0.66835 0.018886 -1.0081 -1.4165 +1 0.32575 -0.51767 1.0187 -0.40914 +2 0.65837 1.2791 1.8388 2.2906 +2 0.37574 0.21618 -0.89435 1.2643 +1 0.13513 -0.31405 -0.16057 0.77712 +2 0.16054 0.40635 0.036165 1.6374 +1 1.9393 1.5717 2.6922 1.1933 +1 -0.59118 -0.47154 -0.20293 -1.5576 +1 -0.35938 -0.49565 -0.20837 0.61043 +2 -0.57133 0.15921 -0.44158 0.43312 +1 0.31835 0.49002 2.2029 0.17685 +1 -0.0093708 -0.85889 -1.0934 -1.6905 +1 -0.90501 -1.4637 -1.5526 -1.828 +2 0.11531 -0.022781 0.88843 0.8607 +1 0.34978 -0.34306 0.95301 -0.056177 +2 -0.22236 -0.13023 0.37608 0.18027 +1 -0.90103 -0.38393 -1.1513 -0.78153 +2 0.66848 0.81005 1.3945 3.3654 +2 0.10539 0.59781 0.77864 0.63865 +1 -1.15 -1.4531 -2.929 -1.6867 +1 0.20842 -0.0039076 -0.12879 -0.31459 +2 0.52155 1.248 1.0411 1.9656 +2 0.041926 0.86223 1.2222 1.0289 +1 -0.70875 -0.15791 -1.1581 -0.77456 +1 -1.1701 -0.57889 -0.8843 -0.11873 +2 0.98106 1.0805 0.95484 2.1834 +2 0.26676 0.7527 0.61491 1.9024 +1 -0.64765 0.19831 -1.4399 1.3127 +2 0.92209 2.2111 1.208 2.7402 +2 -0.93755 -0.26009 0.54448 0.20265 +2 1.2403 1.8468 1.6169 1.8359 +1 -0.1313 0.14288 -0.48278 -0.96105 +1 -0.7222 -0.25191 -1.2122 -0.59027 +2 -0.57013 -0.061267 -0.5438 0.18234 +1 -1.5355 -1.1998 -2.6613 -0.2634 +2 0.86507 0.60361 1.2411 -0.29711 +1 -0.60117 -0.7424 -0.79575 -0.5736 +1 -0.91776 -1.5669 -2.1735 -0.56602 +2 0.9917 2.3088 1.7993 2.645 +1 0.17017 0.53321 0.84278 -1.4458 +2 -0.22306 0.262 -0.86259 0.87407 +1 -0.42107 -0.69813 -0.48166 -1.009 +1 0.46913 -0.76457 0.11077 -0.21258 +1 0.066036 -0.48665 -0.74847 0.38785 +1 0.16465 -0.57268 0.19043 0.23 +1 -1.2044 -2.2027 -2.9688 -2.5546 +1 -0.3031 -2.0277 -1.3027 -2.6541 +2 -0.20063 0.3886 1.2227 0.84669 +2 -0.23897 0.0036995 -1.4547 0.37173 +1 2.197 0.41411 0.68339 -1.2721 +2 1.9922 2.748 3.0416 3.1268 +1 -1.7922 -1.2233 -3.1352 -0.98514 +2 0.66968 0.81377 1.9112 1.7507 +2 1.048 1.3718 1.5938 1.4847 +1 0.56532 -0.97153 -0.91123 -2.4761 +2 -0.53609 -0.30043 -0.65398 -0.38562 +2 1.0012 1.3344 2.0595 2.8441 +1 -3.4639 -2.4231 -3.9055 -2.3575 +1 0.79272 -0.78962 -0.40706 -1.1306 +1 0.78178 0.32152 0.79399 0.14086 +2 -0.28587 0.20138 0.78238 2.1602 +2 1.4137 1.6184 2.2458 2.1799 +2 1.409 1.6079 2.4053 2.0587 +2 -0.049571 1.1163 2.0792 0.99457 +1 -1.394 -0.67782 -2.2302 -0.33872 +2 0.5374 1.8476 2.205 2.0025 +1 -1.4988 -0.90782 -1.4206 -1.2048 +1 -2.2683 -1.7667 -3.7613 -2.0306 +1 0.5275 -0.34657 0.11355 -0.6761 +1 -1.89 -2.1862 -2.3535 -2.2032 +2 1.4183 2.5108 2.4607 1.7296 +1 -0.19829 0.031868 0.014954 -1.7813 +2 1.9842 2.0081 3.2753 3.6534 +1 0.60225 0.089417 0.37343 -1.396 +2 0.15127 0.55563 -0.099824 1.684 +1 -0.30521 -0.0050244 -0.68635 -0.42167 +2 0.65124 0.2796 -0.22261 1.4011 +1 -0.71925 -1.8908 -2.0898 -1.2222 +2 -0.56741 0.091717 -0.37763 0.40742 +1 -2.8956 -2.2286 -3.4496 -3.429 +2 -0.89598 1.0267 -0.4909 1.1085 +1 -0.94952 -0.7555 -1.795 -0.13335 +2 1.2407 2.0614 2.5452 1.9642 +1 -0.11717 -0.54282 -1.9921 -0.72275 +1 -0.45987 -0.58174 -1.1552 -0.76589 +2 1.4219 1.7052 1.3243 2.0381 +1 0.17284 -1.1866 0.12735 -0.89424 +1 -1.5493 -1.5627 -2.191 -1.4248 +2 -0.52149 0.50488 0.88087 1.9829 +2 -0.073205 0.87222 -0.68612 1.5622 +1 -0.20595 -0.60619 -1.2632 -0.31189 +1 -1.6215 -2.0613 -2.6335 -2.0367 +2 0.91305 1.4897 2.1731 2.2545 +1 1.142 1.8275 1.8053 1.0419 +1 -0.45335 -1.322 -1.3973 -0.48254 +2 0.74114 1.8757 1.4174 2.1017 +1 -0.38344 -0.17813 -0.23266 -0.41796 +2 0.92714 1.7223 2.7582 1.4736 +1 -0.96407 -1.004 -1.3232 -0.72647 +1 -0.17388 -0.55234 -0.16535 -1.1821 +1 -1.4482 -1.0906 -1.9966 -0.2562 +1 -1.5948 -1.656 -2.1184 -1.9089 +1 0.30118 -0.24953 0.3965 -1.2012 +1 0.040955 -1.5321 -0.0067596 -1.8302 +2 -0.47573 0.19062 -0.38082 1.4748 +1 -0.57924 -0.90781 -1.0718 -0.87675 +2 1.2355 1.6025 0.66291 1.3094 +1 -0.85148 -1.0376 -0.35579 -0.84493 +1 0.62128 -0.097245 1.1169 1.1175 +1 -1.0166 -0.95689 -0.54272 -1.0278 +2 2.2273 2.234 3.0504 2.9534 +2 0.39445 0.74964 0.49728 0.40693 +1 -1.0992 -1.0596 -0.34052 -1.6927 +2 -0.87373 -0.044581 -0.87888 -0.87457 +1 -0.17361 -1.0992 -0.61197 -0.52145 +2 -0.81143 -0.23214 0.019331 -0.021054 +2 0.4003 0.84559 1.3177 0.22445 +2 2.4797 2.3692 3.1041 1.2821 +2 -1.2217 0.28611 -0.91875 0.53117 +1 -0.37718 -1.1674 1.1769 -0.7679 +2 0.69641 1.3615 1.2907 1.7631 +1 0.058157 -1.4908 -1.6127 -2.051 +2 -0.10351 -0.26543 -1.1031 1.4271 +2 1.5874 1.159 2.1284 1.6052 +2 0.7304 1.8986 1.8219 2.6148 +2 1.2822 1.2151 1.6436 0.45098 +1 -0.67686 -0.50447 -0.81689 -0.47995 +2 0.099845 0.22575 -0.38467 1.3463 +1 -0.60473 -0.56624 -1.0822 -0.9277 +2 -0.09599 -0.052173 0.60328 0.36281 +1 1.3654 0.15181 1.0298 -1.196 +2 -1.4158 -1.1006 -1.9009 0.73982 +1 -0.035902 -0.11554 0.031789 0.15859 +2 -0.41972 -0.75665 -0.12297 -1.1222 +2 0.5198 1.1791 1.4405 0.74397 +2 0.48739 -0.18437 0.062889 1.33 +1 -0.40637 -0.97335 -1.7407 -1.7785 +2 1.2506 2.1236 2.544 2.21 +1 0.2246 0.14729 0.19402 -0.0184 +1 -2.9787 -2.8634 -3.6482 -3.2628 +2 -0.34778 -0.88344 -0.53681 -0.1392 +2 -1.8429 -1.7447 -1.2394 0.076896 +2 0.19618 1.4064 0.26418 1.4885 +1 1.1131 -0.28387 -0.062115 -0.38574 +2 0.49115 0.78076 1.4226 0.55504 +1 -1.8202 -1.2481 -2.3751 -1.7518 +2 1.2174 2.2183 1.4501 3.6806 +1 -1.9377 -1.6646 -3.3068 -2.1189 +2 0.54181 0.5947 0.58072 0.40033 +1 -0.66287 -0.68746 -0.096024 -1.7397 +1 0.40851 0.30851 -0.17237 -0.50364 +2 0.75742 0.4505 -0.78196 0.44425 +1 -1.4505 0.020384 -0.43303 -0.95328 +2 -0.028847 0.15037 0.5137 0.46568 +2 -0.63541 0.3954 -0.8684 1.5549 +1 0.33942 -0.38445 -0.041492 -1.4867 +2 0.47366 1.145 0.23226 1.7193 +1 0.023382 -0.041247 -0.82666 0.080651 +1 -1.1404 -1.0549 -2.3807 -2.1069 +2 0.33731 1.2985 0.71006 3.2157 +1 1.14 -0.87596 0.068296 -0.74487 +2 -0.049493 0.63 0.61696 0.5656 +1 -0.4566 0.65674 0.031943 0.92164 +2 0.017518 0.38805 0.53672 0.36798 +2 0.48676 0.83957 0.81814 1.0935 +2 2.7892 2.4059 4.9329 2.8726 +1 0.43253 0.11799 1.095 -0.30789 +1 -1.1828 -0.8044 -0.85393 -0.88528 +1 -1.5592 -2.1209 -2.309 -3.1197 +2 -1.2601 -1.2767 -1.6618 -0.50383 +2 2.1516 2.1742 2.8387 1.8793 +2 0.24623 0.69241 -0.010176 0.53935 +1 -0.22259 -0.40572 0.11176 -1.348 +1 -0.50134 -1.5699 0.070888 -1.576 +1 -0.59262 -0.25483 -0.97248 -0.80873 +2 0.59278 2.3224 1.2169 3.7789 +2 1.8088 2.2184 2.3414 2.2607 +1 -1.4547 -0.92385 -2.0514 -1.4636 +1 -1.0861 -0.97609 -1.4805 0.049658 +2 -1.3983 -1.4913 -1.5386 -0.37917 +1 0.39015 -0.60643 0.29969 -1.038 +2 -0.56574 0.93819 0.41397 3.0029 +1 0.33141 0.18418 -0.58313 -0.55312 +1 -1.0672 -1.2348 -1.7643 -1.8829 +1 -2.6167 -2.6369 -2.7652 -3.2899 +2 0.86111 1.9481 1.9289 2.6912 +2 -0.17146 0.59905 -0.32254 0.90592 +1 0.56296 0.22567 0.50046 -0.015986 +1 0.27356 0.014082 0.53515 -1.2915 +2 0.028483 0.74312 0.032785 0.86451 +2 0.45844 1.8271 1.9607 1.5293 +1 -1.0948 -0.81939 -1.3227 -1.7485 +2 -1.9435 -1.416 -2.3622 -0.083073 +2 1.9356 2.3905 3.3874 3.3754 +2 -0.51503 -0.61825 -1.0265 1.0355 +1 -0.069375 -0.38404 0.76998 -1.0565 +1 -0.99145 -1.4551 -0.3469 -1.1237 +2 0.22687 0.42981 -0.57465 1.7352 +1 -0.6192 -0.85621 -1.5754 -2.1116 +2 0.044283 0.22217 -0.46803 0.077448 +2 0.25206 0.75089 2.0777 1.6582 +1 -1.4421 0.36925 -1.3094 1.5023 +2 -0.37483 0.92607 0.66991 1.5735 +2 0.96079 1.4626 2.6634 1.8589 +1 -1.3318 -0.19963 -1.0137 -0.69936 +1 1.7601 1.2466 2.176 0.32938 +1 0.30315 -0.016251 0.51713 -0.89472 +2 -1.4913 -0.70336 -0.91095 0.12156 +2 -0.42001 -0.10023 -0.6748 0.60273 +2 1.3951 2.7444 2.8842 3.5656 +1 1.4232 0.6032 3.5048 1.7782 +1 0.73551 0.75694 1.037 -0.57807 +2 -0.39931 0.58809 -0.4973 0.21019 +2 1.3913 1.8648 1.7568 0.93599 +2 0.80965 0.4027 0.24317 1.9104 +1 -0.51752 1.1244 0.48382 0.33224 +1 0.1481 -0.5792 -0.3214 -0.26037 +1 -1.3533 -0.43213 -0.42417 -0.87353 +2 0.56938 0.99576 0.89716 1.7409 +1 -0.079763 -1.7127 -0.63871 -2.5791 +2 2.0641 2.5514 4.0436 2.7148 +1 -0.19435 -0.15077 0.60547 -1.4134 +2 0.081749 0.54813 0.96427 1.7548 +1 1.8213 0.88012 1.1502 0.10288 +2 -0.36776 1.0119 0.72045 1.4314 +2 -0.013532 0.88042 -0.065303 1.2714 +1 -0.46271 -1.5631 -1.3127 -1.5945 +2 0.32816 0.69476 1.2058 0.95562 +2 1.0995 1.9791 1.6754 2.7251 +2 1.2894 2.0428 2.7797 3.0741 +2 0.086177 0.13431 0.15097 1.1387 +2 1.4238 1.8326 1.452 2.2914 +2 -0.26067 0.085743 0.10703 1.6861 +1 0.8651 0.16132 1.2287 -0.49648 +2 1.6258 2.0722 1.5768 2.692 +2 -0.41045 -0.064344 -1.1639 0.35736 +1 0.87048 0.48066 1.3185 0.56768 +1 -0.059767 0.65175 0.20121 -1.4305 +1 -0.27649 -0.71256 -0.93355 0.12948 +2 0.40298 0.62103 0.38596 1.4175 +2 0.92929 1.4075 2.4664 1.9966 +1 -1.7047 -1.5666 -1.9704 -2.1459 +2 -0.31907 0.39015 -0.094609 0.63235 +2 1.43 2.3977 3.1491 2.2081 +1 -1.6535 -0.62255 -1.1695 -0.61433 +2 -0.22619 -0.15443 0.80091 -0.054849 +2 0.38626 1.6316 0.47058 1.4147 +1 0.14484 -0.64224 0.0082434 -0.86504 +2 1.8557 2.0853 3.4931 3.3653 +2 1.9842 3.3837 3.9431 2.2935 +1 -1.8676 -0.25935 -1.384 -0.46349 +2 1.1631 1.8748 2.8603 1.986 +2 0.28825 0.24785 1.285 0.97497 +1 0.014074 -0.43179 0.47159 -1.5869 +2 0.54993 1.3186 0.45672 1.4753 +1 0.36038 -0.17131 0.38497 0.032798 +2 -0.80787 0.028976 0.37316 -0.44677 +2 -0.28951 0.65841 -0.64075 1.0972 +2 0.55213 0.20033 -0.03155 -0.76611 +2 -0.39724 0.7762 0.84015 0.7553 +1 0.93813 0.87454 1.4003 -1.3907 +2 -0.32578 0.26563 -0.33416 1.6042 +2 0.33084 1.2848 1.0439 0.0011286 +2 -0.38575 0.17469 -0.30238 1.5178 +2 1.3498 1.2703 1.9845 1.5933 +2 0.58348 1.167 1.0504 1.1296 +1 1.082 0.6528 0.81685 -0.23314 +2 2.4742 2.4752 3.1153 2.9547 +2 0.12754 0.025728 -0.058504 0.58213 +2 1.817 2.0622 1.4037 1.1949 +2 0.8552 1.6038 1.0049 2.2411 +1 -1.0052 -1.0198 -0.48341 -2.5176 +1 -1.3895 -1.8934 -2.3298 -1.8805 +2 -1.0276 0.3109 -0.56926 0.026187 +1 -1.3081 -0.57127 -2.0782 -2.0429 +2 0.50882 -0.20697 0.013231 1.1618 +1 -0.9931 -1.3226 -0.98672 -0.47612 +1 0.41926 -0.14847 0.91577 -1.2763 +1 -0.93098 -1.0248 -2.0666 -0.55364 +1 -0.25192 -0.73885 0.073947 -0.4339 +1 -0.6545 -0.21517 -1.3672 -1.5453 +2 1.6327 2.0072 2.554 2.6639 +2 0.57601 -0.3015 0.74417 0.88943 +2 1.2264 1.7475 0.67207 1.0271 +1 0.42271 0.040673 0.80654 -0.83604 +1 -0.67361 -0.91976 -2.2619 -1.3054 +2 0.36815 0.93526 1.3126 1.077 +2 -0.1728 0.32075 0.54531 1.9659 +2 1.8385 2.4279 3.2285 3.4634 +1 -1.4314 -0.89679 -1.154 -1.4032 +2 0.38846 0.05761 1.0422 1.9036 +1 0.80821 -0.15658 -0.62623 -0.68719 +1 -1.302 -1.3887 -2.2708 -2.092 +1 -1.2392 -1.4976 -1.3607 -3.0231 +1 -0.3896 -0.42846 -0.75791 -1.7643 +2 1.5723 1.0907 2.0144 1.5574 +2 0.8587 1.1411 1.1627 1.9495 +2 -0.77478 -0.39283 -0.0099916 0.64003 +2 0.1672 0.63395 0.41181 1.3391 +2 -0.14637 0.26969 0.82956 0.41884 +2 0.14447 -0.10291 -0.287 0.80367 +1 0.18687 -0.27602 0.27575 -0.63094 +2 1.2428 1.5281 1.2243 3.0052 +1 -0.052875 -0.25162 -0.60352 -1.208 +2 0.6821 0.21045 1.2654 -0.013434 +1 0.26358 0.068284 0.22081 0.066436 +2 -0.62892 -0.053397 0.047075 0.74043 +2 -0.78913 -0.2106 -1.804 0.01624 +1 0.22995 -0.80286 1.3801 -0.92733 +1 -1.9684 -1.1444 -1.8 -2.7373 +2 -0.5569 -0.61626 -0.86638 0.4016 +2 0.1115 1.0784 -0.3657 1.3313 +1 -0.64278 -0.82557 -0.24553 -1.5426 +2 0.20989 0.049778 0.14976 -0.17113 +2 0.93007 1.927 1.9457 1.1498 +1 0.26164 0.15551 -0.033813 0.44309 +2 0.73092 1.0348 0.74128 2.4557 +2 -0.35204 0.606 -0.43078 1.2194 +1 -0.16719 0.40172 0.76466 0.31738 +2 0.97519 1.447 1.6576 0.8312 +1 -0.47105 -0.44196 -1.6032 0.68482 +2 -0.60894 -0.70426 -0.46443 0.86476 +2 -0.19328 0.33885 0.7601 0.61242 +2 0.12697 0.76843 0.73746 0.81747 +1 0.031673 -0.68398 -0.5238 -0.6702 +1 -0.93868 0.50393 0.10229 -0.63522 +1 -1.0264 -1.1855 -1.9957 -2.5259 +2 -0.5916 0.44419 0.014831 0.77302 +1 1.0176 0.82793 0.63908 -0.62945 +1 0.76611 0.14394 0.43542 -0.86403 +2 0.58551 0.21427 1.0034 0.50604 +2 -0.34577 -0.40185 -0.61186 -0.40606 +1 -0.77597 -1.1617 -1.8329 -3.1861 +2 0.068959 0.30321 0.76889 0.34588 +1 -1.2576 -1.5157 -1.1779 -0.94907 +1 -0.83648 0.090435 0.56704 -0.53314 +2 0.88421 1.707 2.6335 2.255 +2 0.55861 0.94463 0.9639 0.8637 +1 -0.18064 -1.0746 0.99446 -2.7845 +1 0.76049 0.26843 1.5167 -0.24873 +2 0.35634 -0.24447 -0.97159 0.11146 +2 1.7377 2.5182 2.4327 3.2303 +1 -1.624 -1.42 -3.435 -1.0498 +1 -1.2389 -1.8164 -1.726 -1.1608 +1 1.0074 -1.0969 -0.0682 -2.9043 +2 0.21432 0.54189 0.15421 1.1324 +2 1.5187 2.458 2.1317 3.8317 +2 1.5893 1.9248 3.0454 2.0655 +1 0.35221 1.6454 1.8029 -0.44455 +1 -0.54894 0.55414 0.35949 -1.3991 +2 -1.1614 -0.48362 -0.73735 -0.49564 +2 1.1159 1.0502 1.0648 0.3003 +2 0.96161 2.1506 1.531 2.1461 +1 -1.2411 -1.0381 -1.1269 -1.1484 +1 0.11049 -0.27275 -0.55964 -0.70906 +2 2.2862 2.1313 2.6027 2.2877 +1 -0.64184 -1.1552 -0.63442 -1.8594 +2 1.9075 1.8567 3.8481 1.9532 +1 -0.63126 -0.85427 -0.53335 0.37771 +2 0.59491 1.4425 1.9929 0.98581 +1 1.5669 0.7286 2.3314 -0.25628 +1 -2.1064 -1.9792 -3.209 -1.9161 +2 0.62872 0.51499 0.21648 1.4204 +1 -0.51532 -0.93122 -0.72578 -1.3459 +1 0.041397 -0.61347 -0.034157 -0.054858 +1 -0.72287 -1.1269 -1.7365 -1.4906 +1 -1.8362 -0.24614 -1.2446 -0.088146 +2 0.97014 1.3422 1.5292 0.77185 +1 -1.8502 -1.2924 -1.9175 -2.5133 +2 0.77748 0.89065 1.1444 0.26583 +1 -0.15405 0.089319 0.59477 0.16672 +2 1.3054 2.3544 3.2492 1.6727 +2 0.92409 1.3741 0.79866 2.0506 +2 -0.69943 -0.67926 -1.8186 0.67307 +1 -3.2806 -1.8577 -3.5456 -1.7004 +2 0.74119 1.0011 -0.11293 2.328 +2 0.73779 1.6924 1.7521 1.2604 +1 -1.3683 -1.7765 -1.5974 -2.2288 +2 0.46839 -0.27199 -0.1524 0.88269 +1 -0.73595 -1.4506 -1.408 -1.9886 +2 -0.2289 -0.5663 -2.0807 -1.4869 +2 -1.0052 0.16268 -0.48156 0.014777 +1 -0.10211 0.087625 -1.1098 -1.0203 +2 -0.090896 -0.057038 -0.69817 0.19942 +2 -0.42191 0.14803 -0.32168 0.049687 +2 0.84872 0.59768 1.9205 1.1233 +1 0.029696 -1.4186 -0.39548 -0.029631 +2 2.0013 1.9999 3.0139 1.6432 +2 1.1324 0.89689 -0.1229 0.15109 +2 0.93618 2.4521 1.7229 3.4367 +1 -1.0037 -1.435 -2.2126 -1.9473 +2 -2.2472 -1.296 -2.3762 -1.9611 +2 0.62477 1.5212 1.2814 1.4403 +2 0.17619 0.488 0.38575 0.19632 +1 0.79693 0.15328 -0.26972 -0.45147 +2 1.3618 1.6805 1.2152 2.1905 +2 -0.36075 1.0698 0.38569 2.5707 +1 -0.55325 -0.17572 -1.0232 -1.134 +2 0.9795 1.3777 0.26495 0.23258 +1 -0.92872 -1.2233 -2.1998 -1.9011 +1 0.47029 -0.06201 -0.34515 -0.57857 +1 -2.6597 -1.5144 -3.0038 -1.949 +2 -0.064474 -0.25394 -0.34794 0.76334 +2 0.52259 0.76325 0.93484 0.060827 +1 0.89037 0.68007 0.50459 -0.88464 +2 1.0031 1.3853 1.7313 0.75303 +2 0.6954 1.3692 0.19298 1.6174 +2 -0.14026 1.1774 0.39386 -0.25913 +2 -1.7796 -1.2709 -2.5775 -0.36996 +2 0.41557 1.9905 1.839 1.1327 +1 0.53878 -0.71974 -0.65395 -0.62597 +2 0.22326 1.3888 0.17221 1.2265 +1 -0.12667 -1.1336 -0.67 -3.6161 +2 1.0183 1.5883 2.2784 1.7509 +1 -2.0415 -2.2483 -2.8307 -3.1148 +2 -1.1513 -0.08575 -0.62876 2.164 +1 0.1961 0.075096 1.9551 0.039445 +2 -0.96925 0.12921 -1.2741 1.8371 +1 0.34137 0.086468 1.4716 0.55236 +1 -0.20756 -0.74846 0.65256 -0.7032 +2 1.1736 1.0214 1.258 1.0002 +2 0.48081 1.3275 0.54443 1.2194 +2 -0.45146 0.38298 0.64902 0.90395 +1 0.75519 -1.0627 -0.35778 -1.7689 +1 -1.4308 -1.0998 -1.0094 -0.66361 +1 -0.097019 0.18029 -9.0423e-07 0.59444 +2 1.3769 2.4872 3.2855 0.98727 +2 0.79201 0.76361 0.88459 3.119 +2 2.5125 2.4776 4.6119 3.966 +1 0.57129 -0.93689 -0.20516 -0.42323 +1 -0.91517 -0.25445 -1.3515 -0.99354 +1 0.17456 -0.98904 -0.49643 -0.8997 +1 -2.2724 -1.6869 -3.8034 -2.0882 +2 -1.8188 -0.57721 -2.4386 0.058963 +2 -0.19227 0.038901 -0.85065 0.6644 +1 -1.5517 -0.57182 -0.9874 -1.4081 +2 -0.47999 0.49667 0.27351 0.6261 +2 0.45041 0.48469 0.55808 2.0659 +1 -1.1302 -1.255 -2.7206 -1.2712 +1 -0.60672 -1.1008 -2.6889 -1.0078 +1 -1.0508 -0.99612 -1.555 -1.0463 +2 0.14434 0.97791 1.2498 1.7391 +2 0.21333 1.6686 1.219 1.8919 +2 -0.35461 -0.64694 -1.3312 -0.10481 +1 -2.0611 -2.1245 -3.6067 -1.6584 +2 -0.3534 0.45962 -0.39991 0.45667 +1 -0.37564 -0.63085 -1.2641 -1.3292 +1 0.30023 -0.20283 0.041852 -0.17139 +2 0.25089 1.0204 1.8084 1.0493 +1 -0.44041 -1.1143 -0.59224 -0.84288 +2 -0.11392 0.5681 -0.054604 0.88897 +1 0.41829 -1.042 -0.0042274 -1.9512 +2 1.4863 2.9227 3.0012 3.1253 +1 -0.60588 -1.1196 -1.4647 -0.92268 +1 -0.10497 -0.74629 -1.8353 -0.35425 +1 -1.2499 -0.83335 -2.4047 -1.4657 +1 -0.51414 -1.4602 -0.54649 -1.0475 +1 0.56956 0.79545 0.86494 -0.59471 +1 -0.64964 -0.78543 -1.9412 -2.2114 +2 1.0044 0.56431 1.2968 1.3807 +1 -1.1924 -0.69401 -0.72828 -1.7252 +2 0.15739 1.0449 0.3742 1.4303 +2 0.49582 1.4353 1.1652 1.5814 + diff --git a/sourcecodes/data/old/example_sci_bk/Llugraphviz.txt b/sourcecodes/data/old/example_sci_bk/Llugraphviz.txt new file mode 100644 index 00000000..88bbd3ba --- /dev/null +++ b/sourcecodes/data/old/example_sci_bk/Llugraphviz.txt @@ -0,0 +1,10 @@ +digraph G { +size="10,10"; ratio = fill; +node [shape=square,width=1.5]; +Genotype -> Gene3; +Genotype -> Gene1; +Gene3 -> Phenotype; +Gene2 -> Gene3; +Gene2 -> Phenotype; +Gene1 -> Gene2; +} \ No newline at end of file diff --git a/sourcecodes/data/old/example_sci_bk/Lluk.txt b/sourcecodes/data/old/example_sci_bk/Lluk.txt new file mode 100644 index 00000000..83b33d23 --- /dev/null +++ b/sourcecodes/data/old/example_sci_bk/Lluk.txt @@ -0,0 +1 @@ +1000 diff --git a/sourcecodes/data/old/example_sci_bk/Llumap.txt b/sourcecodes/data/old/example_sci_bk/Llumap.txt new file mode 100644 index 00000000..958281d5 --- /dev/null +++ b/sourcecodes/data/old/example_sci_bk/Llumap.txt @@ -0,0 +1,5 @@ +Genotype 2 0.500305 1.514000 +Gene3 1 1.027261 -0.015284 +Gene2 1 1.160583 0.138097 +Phenotype 1 1.554104 0.069005 +Gene1 1 1.515414 0.174451 diff --git a/sourcecodes/data/old/example_sci_bk/Llumapdata.txt b/sourcecodes/data/old/example_sci_bk/Llumapdata.txt new file mode 100644 index 00000000..d684ea06 --- /dev/null +++ b/sourcecodes/data/old/example_sci_bk/Llumapdata.txt @@ -0,0 +1 @@ +Genotype Gene1 Gene2 Gene3 Phenotype diff --git a/sourcecodes/data/old/example_sci_bk/Lluname.txt b/sourcecodes/data/old/example_sci_bk/Lluname.txt new file mode 100644 index 00000000..f3a1f5bf --- /dev/null +++ b/sourcecodes/data/old/example_sci_bk/Lluname.txt @@ -0,0 +1 @@ +Genotype Gene3 Gene2 Phenotype Gene1 diff --git a/sourcecodes/data/old/example_sci_bk/Llunet_figure.txt b/sourcecodes/data/old/example_sci_bk/Llunet_figure.txt new file mode 100644 index 00000000..bdc07cbd --- /dev/null +++ b/sourcecodes/data/old/example_sci_bk/Llunet_figure.txt @@ -0,0 +1,433 @@ +5 +1200 1200 +Genotype 0 0 +Gene1 120 200 +Gene2 0 400 +Gene3 120 600 +Phenotype 0 800 +Genotype 2 +250 150 +0 +2 2 4 +1 0.4860 +2 0.5140 +Gene1 1 +250 150 +1 1 +1 3 +-3.5013 0.0009 +-3.4313 0.0012 +-3.3613 0.0015 +-3.2912 0.0019 +-3.2212 0.0024 +-3.1512 0.0030 +-3.0811 0.0037 +-3.0111 0.0046 +-2.9411 0.0056 +-2.8710 0.0069 +-2.8010 0.0083 +-2.7310 0.0101 +-2.6609 0.0121 +-2.5909 0.0145 +-2.5209 0.0174 +-2.4508 0.0206 +-2.3808 0.0243 +-2.3108 0.0286 +-2.2407 0.0335 +-2.1707 0.0389 +-2.1007 0.0451 +-2.0306 0.0520 +-1.9606 0.0597 +-1.8906 0.0682 +-1.8205 0.0775 +-1.7505 0.0876 +-1.6805 0.0986 +-1.6104 0.1105 +-1.5404 0.1231 +-1.4704 0.1366 +-1.4003 0.1508 +-1.3303 0.1657 +-1.2603 0.1811 +-1.1902 0.1971 +-1.1202 0.2134 +-1.0502 0.2300 +-0.9801 0.2467 +-0.9101 0.2633 +-0.8401 0.2797 +-0.7700 0.2956 +-0.7000 0.3110 +-0.6300 0.3256 +-0.5599 0.3392 +-0.4899 0.3517 +-0.4199 0.3629 +-0.3498 0.3726 +-0.2798 0.3808 +-0.2098 0.3873 +-0.1397 0.3920 +-0.0697 0.3948 +0.0003 0.3958 +0.0704 0.3948 +0.1404 0.3920 +0.2104 0.3872 +0.2805 0.3807 +0.3505 0.3726 +0.4205 0.3628 +0.4906 0.3516 +0.5606 0.3391 +0.6306 0.3254 +0.7007 0.3108 +0.7707 0.2955 +0.8407 0.2795 +0.9108 0.2631 +0.9808 0.2465 +1.0508 0.2299 +1.1209 0.2133 +1.1909 0.1969 +1.2609 0.1810 +1.3310 0.1655 +1.4010 0.1507 +1.4710 0.1365 +1.5411 0.1230 +1.6111 0.1103 +1.6811 0.0985 +1.7512 0.0875 +1.8212 0.0774 +1.8912 0.0681 +1.9613 0.0596 +2.0313 0.0520 +2.1013 0.0451 +2.1714 0.0389 +2.2414 0.0334 +2.3114 0.0286 +2.3815 0.0243 +2.4515 0.0206 +2.5215 0.0173 +2.5916 0.0145 +2.6616 0.0121 +2.7316 0.0101 +2.8017 0.0083 +2.8717 0.0068 +2.9417 0.0056 +3.0118 0.0046 +3.0818 0.0037 +3.1518 0.0030 +3.2219 0.0024 +3.2919 0.0019 +3.3619 0.0015 +3.4320 0.0012 +3.5020 0.0009 +Gene2 1 +250 150 +1 2 +2 4 5 +-3.5862 0.0008 +-3.5124 0.0010 +-3.4385 0.0013 +-3.3647 0.0016 +-3.2909 0.0020 +-3.2171 0.0026 +-3.1432 0.0032 +-3.0694 0.0041 +-2.9956 0.0050 +-2.9218 0.0062 +-2.8479 0.0077 +-2.7741 0.0094 +-2.7003 0.0114 +-2.6264 0.0138 +-2.5526 0.0166 +-2.4788 0.0199 +-2.4050 0.0237 +-2.3311 0.0281 +-2.2573 0.0331 +-2.1835 0.0388 +-2.1097 0.0453 +-2.0358 0.0526 +-1.9620 0.0607 +-1.8882 0.0696 +-1.8143 0.0795 +-1.7405 0.0903 +-1.6667 0.1021 +-1.5929 0.1147 +-1.5190 0.1282 +-1.4452 0.1426 +-1.3714 0.1578 +-1.2976 0.1736 +-1.2237 0.1900 +-1.1499 0.2069 +-1.0761 0.2241 +-1.0022 0.2414 +-0.9284 0.2587 +-0.8546 0.2758 +-0.7808 0.2924 +-0.7069 0.3084 +-0.6331 0.3236 +-0.5593 0.3377 +-0.4855 0.3506 +-0.4116 0.3621 +-0.3378 0.3719 +-0.2640 0.3800 +-0.1901 0.3863 +-0.1163 0.3905 +-0.0425 0.3927 +0.0313 0.3929 +0.1052 0.3910 +0.1790 0.3870 +0.2528 0.3811 +0.3266 0.3732 +0.4005 0.3636 +0.4743 0.3524 +0.5481 0.3397 +0.6220 0.3258 +0.6958 0.3108 +0.7696 0.2949 +0.8434 0.2783 +0.9173 0.2613 +0.9911 0.2440 +1.0649 0.2267 +1.1387 0.2095 +1.2126 0.1925 +1.2864 0.1760 +1.3602 0.1601 +1.4341 0.1449 +1.5079 0.1304 +1.5817 0.1167 +1.6555 0.1039 +1.7294 0.0920 +1.8032 0.0811 +1.8770 0.0711 +1.9508 0.0620 +2.0247 0.0537 +2.0985 0.0464 +2.1723 0.0398 +2.2462 0.0340 +2.3200 0.0288 +2.3938 0.0243 +2.4676 0.0205 +2.5415 0.0171 +2.6153 0.0142 +2.6891 0.0117 +2.7629 0.0097 +2.8368 0.0079 +2.9106 0.0064 +2.9844 0.0052 +3.0583 0.0042 +3.1321 0.0034 +3.2059 0.0027 +3.2797 0.0021 +3.3536 0.0017 +3.4274 0.0013 +3.5012 0.0010 +3.5750 0.0008 +3.6489 0.0006 +3.7227 0.0005 +3.7965 0.0004 +Gene3 1 +250 150 +2 1 3 +1 5 +-4.3571 0.0001 +-4.2762 0.0001 +-4.1954 0.0001 +-4.1145 0.0001 +-4.0336 0.0002 +-3.9527 0.0002 +-3.8719 0.0003 +-3.7910 0.0004 +-3.7101 0.0006 +-3.6293 0.0008 +-3.5484 0.0010 +-3.4675 0.0013 +-3.3866 0.0018 +-3.3058 0.0023 +-3.2249 0.0029 +-3.1440 0.0037 +-3.0632 0.0047 +-2.9823 0.0059 +-2.9014 0.0074 +-2.8205 0.0092 +-2.7397 0.0113 +-2.6588 0.0139 +-2.5779 0.0170 +-2.4971 0.0206 +-2.4162 0.0248 +-2.3353 0.0297 +-2.2544 0.0354 +-2.1736 0.0419 +-2.0927 0.0493 +-2.0118 0.0576 +-1.9310 0.0669 +-1.8501 0.0773 +-1.7692 0.0887 +-1.6883 0.1012 +-1.6075 0.1147 +-1.5266 0.1292 +-1.4457 0.1447 +-1.3648 0.1610 +-1.2840 0.1781 +-1.2031 0.1958 +-1.1222 0.2139 +-1.0414 0.2323 +-0.9605 0.2507 +-0.8796 0.2688 +-0.7987 0.2866 +-0.7179 0.3036 +-0.6370 0.3197 +-0.5561 0.3345 +-0.4753 0.3479 +-0.3944 0.3597 +-0.3135 0.3695 +-0.2326 0.3773 +-0.1518 0.3828 +-0.0709 0.3861 +0.0100 0.3870 +0.0908 0.3855 +0.1717 0.3817 +0.2526 0.3756 +0.3335 0.3673 +0.4143 0.3570 +0.4952 0.3449 +0.5761 0.3311 +0.6569 0.3160 +0.7378 0.2996 +0.8187 0.2824 +0.8996 0.2645 +0.9804 0.2463 +1.0613 0.2279 +1.1422 0.2095 +1.2230 0.1915 +1.3039 0.1740 +1.3848 0.1570 +1.4657 0.1409 +1.5465 0.1256 +1.6274 0.1114 +1.7083 0.0981 +1.7891 0.0859 +1.8700 0.0747 +1.9509 0.0646 +2.0318 0.0555 +2.1126 0.0474 +2.1935 0.0402 +2.2744 0.0340 +2.3552 0.0285 +2.4361 0.0237 +2.5170 0.0197 +2.5979 0.0162 +2.6787 0.0132 +2.7596 0.0108 +2.8405 0.0087 +2.9213 0.0070 +3.0022 0.0056 +3.0831 0.0044 +3.1640 0.0035 +3.2448 0.0027 +3.3257 0.0021 +3.4066 0.0016 +3.4874 0.0013 +3.5683 0.0010 +3.6492 0.0007 +3.7301 0.0006 +Phenotype 1 +250 150 +2 3 4 +0 +-3.5574 0.0010 +-3.4806 0.0013 +-3.4037 0.0016 +-3.3268 0.0021 +-3.2499 0.0026 +-3.1731 0.0033 +-3.0962 0.0042 +-3.0193 0.0052 +-2.9425 0.0065 +-2.8656 0.0080 +-2.7887 0.0098 +-2.7118 0.0120 +-2.6350 0.0146 +-2.5581 0.0176 +-2.4812 0.0212 +-2.4044 0.0253 +-2.3275 0.0300 +-2.2506 0.0354 +-2.1737 0.0416 +-2.0969 0.0486 +-2.0200 0.0564 +-1.9431 0.0651 +-1.8663 0.0748 +-1.7894 0.0854 +-1.7125 0.0970 +-1.6356 0.1096 +-1.5588 0.1230 +-1.4819 0.1374 +-1.4050 0.1526 +-1.3282 0.1685 +-1.2513 0.1850 +-1.1744 0.2021 +-1.0975 0.2195 +-1.0207 0.2370 +-0.9438 0.2545 +-0.8669 0.2718 +-0.7901 0.2887 +-0.7132 0.3049 +-0.6363 0.3202 +-0.5594 0.3344 +-0.4826 0.3473 +-0.4057 0.3587 +-0.3288 0.3684 +-0.2520 0.3763 +-0.1751 0.3822 +-0.0982 0.3860 +-0.0213 0.3877 +0.0555 0.3872 +0.1324 0.3846 +0.2093 0.3798 +0.2861 0.3731 +0.3630 0.3644 +0.4399 0.3539 +0.5168 0.3418 +0.5936 0.3283 +0.6705 0.3136 +0.7474 0.2979 +0.8242 0.2813 +0.9011 0.2643 +0.9780 0.2468 +1.0549 0.2293 +1.1317 0.2118 +1.2086 0.1945 +1.2855 0.1777 +1.3623 0.1614 +1.4392 0.1458 +1.5161 0.1310 +1.5930 0.1170 +1.6698 0.1039 +1.7467 0.0918 +1.8236 0.0806 +1.9004 0.0704 +1.9773 0.0612 +2.0542 0.0529 +2.1311 0.0454 +2.2079 0.0388 +2.2848 0.0329 +2.3617 0.0278 +2.4385 0.0234 +2.5154 0.0195 +2.5923 0.0162 +2.6692 0.0134 +2.7460 0.0110 +2.8229 0.0090 +2.8998 0.0073 +2.9766 0.0059 +3.0535 0.0047 +3.1304 0.0038 +3.2073 0.0030 +3.2841 0.0024 +3.3610 0.0019 +3.4379 0.0015 +3.5147 0.0011 +3.5916 0.0009 +3.6685 0.0007 +3.7454 0.0005 +3.8222 0.0004 +3.8991 0.0003 +3.9760 0.0002 +4.0528 0.0002 +4.1297 0.0001 diff --git a/sourcecodes/data/old/example_sci_bk/Llunet_figure_new.txt b/sourcecodes/data/old/example_sci_bk/Llunet_figure_new.txt new file mode 100644 index 00000000..7e6f0d97 --- /dev/null +++ b/sourcecodes/data/old/example_sci_bk/Llunet_figure_new.txt @@ -0,0 +1,433 @@ +1 +5 +1200 1200 +Genotype 0 0 +Gene1 120 200 +Gene2 0 400 +Gene3 120 600 +Phenotype 0 800 +Genotype 2 +250 150 +0 +2 2 4 +1.0000 1.0000 +Gene1 1 +250 150 +1 1 +1 3 +-3.5013 0.0000 +-3.4313 0.0000 +-3.3613 0.0000 +-3.2912 0.0000 +-3.2212 0.0000 +-3.1512 0.0000 +-3.0811 0.0000 +-3.0111 0.0000 +-2.9411 0.0000 +-2.8710 0.0000 +-2.8010 0.0000 +-2.7310 0.0000 +-2.6609 0.0000 +-2.5909 0.0000 +-2.5209 0.0001 +-2.4508 0.0002 +-2.3808 0.0004 +-2.3108 0.0007 +-2.2407 0.0014 +-2.1707 0.0026 +-2.1007 0.0046 +-2.0306 0.0079 +-1.9606 0.0133 +-1.8906 0.0217 +-1.8205 0.0344 +-1.7505 0.0529 +-1.6805 0.0791 +-1.6104 0.1147 +-1.5404 0.1615 +-1.4704 0.2207 +-1.4003 0.2928 +-1.3303 0.3771 +-1.2603 0.4715 +-1.1902 0.5723 +-1.1202 0.6743 +-1.0502 0.7713 +-0.9801 0.8564 +-0.9101 0.9232 +-0.8401 0.9660 +-0.7700 0.9813 +-0.7000 0.9676 +-0.6300 0.9263 +-0.5599 0.8608 +-0.4899 0.7765 +-0.4199 0.6800 +-0.3498 0.5781 +-0.2798 0.4771 +-0.2098 0.3822 +-0.1397 0.2973 +-0.0697 0.2244 +0.0003 0.1645 +0.0704 0.1170 +0.1404 0.0808 +0.2104 0.0542 +0.2805 0.0353 +0.3505 0.0223 +0.4205 0.0137 +0.4906 0.0081 +0.5606 0.0047 +0.6306 0.0026 +0.7007 0.0014 +0.7707 0.0008 +0.8407 0.0004 +0.9108 0.0002 +0.9808 0.0001 +1.0508 0.0000 +1.1209 0.0000 +1.1909 0.0000 +1.2609 0.0000 +1.3310 0.0000 +1.4010 0.0000 +1.4710 0.0000 +1.5411 0.0000 +1.6111 0.0000 +1.6811 0.0000 +1.7512 0.0000 +1.8212 0.0000 +1.8912 0.0000 +1.9613 0.0000 +2.0313 0.0000 +2.1013 0.0000 +2.1714 0.0000 +2.2414 0.0000 +2.3114 0.0000 +2.3815 0.0000 +2.4515 0.0000 +2.5215 0.0000 +2.5916 0.0000 +2.6616 0.0000 +2.7316 0.0000 +2.8017 0.0000 +2.8717 0.0000 +2.9417 0.0000 +3.0118 0.0000 +3.0818 0.0000 +3.1518 0.0000 +3.2219 0.0000 +3.2919 0.0000 +3.3619 0.0000 +3.4320 0.0000 +3.5020 0.0000 +Gene2 1 +250 150 +1 2 +2 4 5 +-3.5862 0.0000 +-3.5124 0.0000 +-3.4385 0.0000 +-3.3647 0.0000 +-3.2909 0.0000 +-3.2171 0.0001 +-3.1432 0.0001 +-3.0694 0.0002 +-2.9956 0.0003 +-2.9218 0.0005 +-2.8479 0.0008 +-2.7741 0.0012 +-2.7003 0.0018 +-2.6264 0.0028 +-2.5526 0.0041 +-2.4788 0.0060 +-2.4050 0.0087 +-2.3311 0.0124 +-2.2573 0.0175 +-2.1835 0.0242 +-2.1097 0.0329 +-2.0358 0.0441 +-1.9620 0.0583 +-1.8882 0.0759 +-1.8143 0.0974 +-1.7405 0.1230 +-1.6667 0.1530 +-1.5929 0.1874 +-1.5190 0.2262 +-1.4452 0.2689 +-1.3714 0.3148 +-1.2976 0.3631 +-1.2237 0.4126 +-1.1499 0.4617 +-1.0761 0.5089 +-1.0022 0.5525 +-0.9284 0.5908 +-0.8546 0.6224 +-0.7808 0.6458 +-0.7069 0.6600 +-0.6331 0.6644 +-0.5593 0.6588 +-0.4855 0.6434 +-0.4116 0.6190 +-0.3378 0.5866 +-0.2640 0.5475 +-0.1901 0.5034 +-0.1163 0.4558 +-0.0425 0.4066 +0.0313 0.3573 +0.1052 0.3092 +0.1790 0.2636 +0.2528 0.2213 +0.3266 0.1830 +0.4005 0.1491 +0.4743 0.1197 +0.5481 0.0946 +0.6220 0.0736 +0.6958 0.0565 +0.7696 0.0426 +0.8434 0.0317 +0.9173 0.0233 +0.9911 0.0168 +1.0649 0.0119 +1.1387 0.0084 +1.2126 0.0058 +1.2864 0.0039 +1.3602 0.0026 +1.4341 0.0017 +1.5079 0.0011 +1.5817 0.0007 +1.6555 0.0005 +1.7294 0.0003 +1.8032 0.0002 +1.8770 0.0001 +1.9508 0.0001 +2.0247 0.0000 +2.0985 0.0000 +2.1723 0.0000 +2.2462 0.0000 +2.3200 0.0000 +2.3938 0.0000 +2.4676 0.0000 +2.5415 0.0000 +2.6153 0.0000 +2.6891 0.0000 +2.7629 0.0000 +2.8368 0.0000 +2.9106 0.0000 +2.9844 0.0000 +3.0583 0.0000 +3.1321 0.0000 +3.2059 0.0000 +3.2797 0.0000 +3.3536 0.0000 +3.4274 0.0000 +3.5012 0.0000 +3.5750 0.0000 +3.6489 0.0000 +3.7227 0.0000 +3.7965 0.0000 +Gene3 1 +250 150 +2 1 3 +1 5 +-4.3571 0.0002 +-4.2762 0.0002 +-4.1954 0.0003 +-4.1145 0.0004 +-4.0336 0.0005 +-3.9527 0.0007 +-3.8719 0.0010 +-3.7910 0.0013 +-3.7101 0.0017 +-3.6293 0.0022 +-3.5484 0.0028 +-3.4675 0.0036 +-3.3866 0.0046 +-3.3058 0.0059 +-3.2249 0.0074 +-3.1440 0.0093 +-3.0632 0.0115 +-2.9823 0.0143 +-2.9014 0.0175 +-2.8205 0.0214 +-2.7397 0.0260 +-2.6588 0.0313 +-2.5779 0.0374 +-2.4971 0.0445 +-2.4162 0.0526 +-2.3353 0.0617 +-2.2544 0.0719 +-2.1736 0.0833 +-2.0927 0.0958 +-2.0118 0.1095 +-1.9310 0.1243 +-1.8501 0.1403 +-1.7692 0.1572 +-1.6883 0.1750 +-1.6075 0.1936 +-1.5266 0.2127 +-1.4457 0.2322 +-1.3648 0.2518 +-1.2840 0.2713 +-1.2031 0.2904 +-1.1222 0.3088 +-1.0414 0.3263 +-0.9605 0.3424 +-0.8796 0.3570 +-0.7987 0.3698 +-0.7179 0.3806 +-0.6370 0.3890 +-0.5561 0.3951 +-0.4753 0.3987 +-0.3944 0.3996 +-0.3135 0.3980 +-0.2326 0.3937 +-0.1518 0.3869 +-0.0709 0.3778 +0.0100 0.3665 +0.0908 0.3532 +0.1717 0.3381 +0.2526 0.3216 +0.3335 0.3039 +0.4143 0.2852 +0.4952 0.2660 +0.5761 0.2464 +0.6569 0.2268 +0.7378 0.2074 +0.8187 0.1884 +0.8996 0.1700 +0.9804 0.1524 +1.0613 0.1358 +1.1422 0.1201 +1.2230 0.1056 +1.3039 0.0922 +1.3848 0.0800 +1.4657 0.0690 +1.5465 0.0591 +1.6274 0.0502 +1.7083 0.0425 +1.7891 0.0357 +1.8700 0.0297 +1.9509 0.0246 +2.0318 0.0203 +2.1126 0.0166 +2.1935 0.0135 +2.2744 0.0109 +2.3552 0.0087 +2.4361 0.0070 +2.5170 0.0055 +2.5979 0.0043 +2.6787 0.0034 +2.7596 0.0026 +2.8405 0.0020 +2.9213 0.0015 +3.0022 0.0012 +3.0831 0.0009 +3.1640 0.0007 +3.2448 0.0005 +3.3257 0.0004 +3.4066 0.0003 +3.4874 0.0002 +3.5683 0.0001 +3.6492 0.0001 +3.7301 0.0001 +Phenotype 1 +250 150 +2 3 4 +0 +-3.5574 0.0004 +-3.4806 0.0006 +-3.4037 0.0008 +-3.3268 0.0012 +-3.2499 0.0016 +-3.1731 0.0022 +-3.0962 0.0030 +-3.0193 0.0040 +-2.9425 0.0054 +-2.8656 0.0071 +-2.7887 0.0093 +-2.7118 0.0121 +-2.6350 0.0155 +-2.5581 0.0198 +-2.4812 0.0250 +-2.4044 0.0313 +-2.3275 0.0389 +-2.2506 0.0479 +-2.1737 0.0584 +-2.0969 0.0706 +-2.0200 0.0846 +-1.9431 0.1005 +-1.8663 0.1184 +-1.7894 0.1381 +-1.7125 0.1597 +-1.6356 0.1831 +-1.5588 0.2081 +-1.4819 0.2343 +-1.4050 0.2615 +-1.3282 0.2893 +-1.2513 0.3173 +-1.1744 0.3448 +-1.0975 0.3714 +-1.0207 0.3966 +-0.9438 0.4197 +-0.8669 0.4402 +-0.7901 0.4576 +-0.7132 0.4716 +-0.6363 0.4816 +-0.5594 0.4875 +-0.4826 0.4891 +-0.4057 0.4864 +-0.3288 0.4794 +-0.2520 0.4684 +-0.1751 0.4535 +-0.0982 0.4353 +-0.0213 0.4140 +0.0555 0.3904 +0.1324 0.3648 +0.2093 0.3379 +0.2861 0.3102 +0.3630 0.2822 +0.4399 0.2545 +0.5168 0.2275 +0.5936 0.2016 +0.6705 0.1770 +0.7474 0.1541 +0.8242 0.1329 +0.9011 0.1136 +0.9780 0.0963 +1.0549 0.0809 +1.1317 0.0673 +1.2086 0.0556 +1.2855 0.0455 +1.3623 0.0368 +1.4392 0.0296 +1.5161 0.0236 +1.5930 0.0186 +1.6698 0.0146 +1.7467 0.0113 +1.8236 0.0087 +1.9004 0.0066 +1.9773 0.0050 +2.0542 0.0037 +2.1311 0.0028 +2.2079 0.0020 +2.2848 0.0015 +2.3617 0.0011 +2.4385 0.0008 +2.5154 0.0005 +2.5923 0.0004 +2.6692 0.0003 +2.7460 0.0002 +2.8229 0.0001 +2.8998 0.0001 +2.9766 0.0001 +3.0535 0.0000 +3.1304 0.0000 +3.2073 0.0000 +3.2841 0.0000 +3.3610 0.0000 +3.4379 0.0000 +3.5147 0.0000 +3.5916 0.0000 +3.6685 0.0000 +3.7454 0.0000 +3.8222 0.0000 +3.8991 0.0000 +3.9760 0.0000 +4.0528 0.0000 +4.1297 0.0000 diff --git a/sourcecodes/data/old/example_sci_bk/Llunlevels.txt b/sourcecodes/data/old/example_sci_bk/Llunlevels.txt new file mode 100644 index 00000000..714e56bd --- /dev/null +++ b/sourcecodes/data/old/example_sci_bk/Llunlevels.txt @@ -0,0 +1,2 @@ +Genotype 1 2 + diff --git a/sourcecodes/data/old/example_sci_bk/Llunnode.txt b/sourcecodes/data/old/example_sci_bk/Llunnode.txt new file mode 100644 index 00000000..7ed6ff82 --- /dev/null +++ b/sourcecodes/data/old/example_sci_bk/Llunnode.txt @@ -0,0 +1 @@ +5 diff --git a/sourcecodes/data/old/example_sci_bk/Llunrows.txt b/sourcecodes/data/old/example_sci_bk/Llunrows.txt new file mode 100644 index 00000000..c15fb720 --- /dev/null +++ b/sourcecodes/data/old/example_sci_bk/Llunrows.txt @@ -0,0 +1 @@ +501 diff --git a/sourcecodes/data/old/example_sci_bk/Lluparent.txt b/sourcecodes/data/old/example_sci_bk/Lluparent.txt new file mode 100644 index 00000000..b8626c4c --- /dev/null +++ b/sourcecodes/data/old/example_sci_bk/Lluparent.txt @@ -0,0 +1 @@ +4 diff --git a/sourcecodes/data/old/example_sci_bk/Llustructure_input.txt b/sourcecodes/data/old/example_sci_bk/Llustructure_input.txt new file mode 100644 index 00000000..bcf72d97 --- /dev/null +++ b/sourcecodes/data/old/example_sci_bk/Llustructure_input.txt @@ -0,0 +1,6 @@ +Genotype Gene3 Gene2 Phenotype Gene1 +0 1 0 0 1 +0 0 0 1 0 +0 1 0 1 0 +0 0 0 0 0 +0 0 1 0 0 diff --git a/sourcecodes/data/old/example_sci_bk/Llustructure_input_temp.txt b/sourcecodes/data/old/example_sci_bk/Llustructure_input_temp.txt new file mode 100644 index 00000000..95aa7a5d --- /dev/null +++ b/sourcecodes/data/old/example_sci_bk/Llustructure_input_temp.txt @@ -0,0 +1,6 @@ +Genotype Gene3 Gene2 Phenotype Gene1 +0.000000 0.999929 0.183248 0.000431 1.000000 +0.000000 0.000000 0.000000 1.000000 0.000000 +0.000000 0.935752 0.000000 1.000000 0.000000 +0.000000 0.000000 0.000000 0.000000 0.000000 +0.000000 0.053385 0.881001 0.156255 0.000000 diff --git a/sourcecodes/data/old/example_sci_bk/Llustructure_old.txt b/sourcecodes/data/old/example_sci_bk/Llustructure_old.txt new file mode 100644 index 00000000..5b464577 --- /dev/null +++ b/sourcecodes/data/old/example_sci_bk/Llustructure_old.txt @@ -0,0 +1,5 @@ +Genotype 0.4860 0.5140 +Gene3 0.0001 0.0001 0.0001 0.0001 0.0002 0.0002 0.0003 0.0004 0.0006 0.0008 0.0010 0.0013 0.0018 0.0023 0.0029 0.0037 0.0047 0.0059 0.0074 0.0092 0.0113 0.0139 0.0170 0.0206 0.0248 0.0297 0.0354 0.0419 0.0493 0.0576 0.0669 0.0773 0.0887 0.1012 0.1147 0.1292 0.1447 0.1610 0.1781 0.1958 0.2139 0.2323 0.2507 0.2688 0.2866 0.3036 0.3197 0.3345 0.3479 0.3597 0.3695 0.3773 0.3828 0.3861 0.3870 0.3855 0.3817 0.3756 0.3673 0.3570 0.3449 0.3311 0.3160 0.2996 0.2824 0.2645 0.2463 0.2279 0.2095 0.1915 0.1740 0.1570 0.1409 0.1256 0.1114 0.0981 0.0859 0.0747 0.0646 0.0555 0.0474 0.0402 0.0340 0.0285 0.0237 0.0197 0.0162 0.0132 0.0108 0.0087 0.0070 0.0056 0.0044 0.0035 0.0027 0.0021 0.0016 0.0013 0.0010 0.0007 0.0006 +Gene1 0.0009 0.0012 0.0015 0.0019 0.0024 0.0030 0.0037 0.0046 0.0056 0.0069 0.0083 0.0101 0.0121 0.0145 0.0174 0.0206 0.0243 0.0286 0.0335 0.0389 0.0451 0.0520 0.0597 0.0682 0.0775 0.0876 0.0986 0.1105 0.1231 0.1366 0.1508 0.1657 0.1811 0.1971 0.2134 0.2300 0.2467 0.2633 0.2797 0.2956 0.3110 0.3256 0.3392 0.3517 0.3629 0.3726 0.3808 0.3873 0.3920 0.3948 0.3958 0.3948 0.3920 0.3872 0.3807 0.3726 0.3628 0.3516 0.3391 0.3254 0.3108 0.2955 0.2795 0.2631 0.2465 0.2299 0.2133 0.1969 0.1810 0.1655 0.1507 0.1365 0.1230 0.1103 0.0985 0.0875 0.0774 0.0681 0.0596 0.0520 0.0451 0.0389 0.0334 0.0286 0.0243 0.0206 0.0173 0.0145 0.0121 0.0101 0.0083 0.0068 0.0056 0.0046 0.0037 0.0030 0.0024 0.0019 0.0015 0.0012 0.0009 +Phenotype 0.0010 0.0013 0.0016 0.0021 0.0026 0.0033 0.0042 0.0052 0.0065 0.0080 0.0098 0.0120 0.0146 0.0176 0.0212 0.0253 0.0300 0.0354 0.0416 0.0486 0.0564 0.0651 0.0748 0.0854 0.0970 0.1096 0.1230 0.1374 0.1526 0.1685 0.1850 0.2021 0.2195 0.2370 0.2545 0.2718 0.2887 0.3049 0.3202 0.3344 0.3473 0.3587 0.3684 0.3763 0.3822 0.3860 0.3877 0.3872 0.3846 0.3798 0.3731 0.3644 0.3539 0.3418 0.3283 0.3136 0.2979 0.2813 0.2643 0.2468 0.2293 0.2118 0.1945 0.1777 0.1614 0.1458 0.1310 0.1170 0.1039 0.0918 0.0806 0.0704 0.0612 0.0529 0.0454 0.0388 0.0329 0.0278 0.0234 0.0195 0.0162 0.0134 0.0110 0.0090 0.0073 0.0059 0.0047 0.0038 0.0030 0.0024 0.0019 0.0015 0.0011 0.0009 0.0007 0.0005 0.0004 0.0003 0.0002 0.0002 0.0001 +Gene2 0.0008 0.0010 0.0013 0.0016 0.0020 0.0026 0.0032 0.0041 0.0050 0.0062 0.0077 0.0094 0.0114 0.0138 0.0166 0.0199 0.0237 0.0281 0.0331 0.0388 0.0453 0.0526 0.0607 0.0696 0.0795 0.0903 0.1021 0.1147 0.1282 0.1426 0.1578 0.1736 0.1900 0.2069 0.2241 0.2414 0.2587 0.2758 0.2924 0.3084 0.3236 0.3377 0.3506 0.3621 0.3719 0.3800 0.3863 0.3905 0.3927 0.3929 0.3910 0.3870 0.3811 0.3732 0.3636 0.3524 0.3397 0.3258 0.3108 0.2949 0.2783 0.2613 0.2440 0.2267 0.2095 0.1925 0.1760 0.1601 0.1449 0.1304 0.1167 0.1039 0.0920 0.0811 0.0711 0.0620 0.0537 0.0464 0.0398 0.0340 0.0288 0.0243 0.0205 0.0171 0.0142 0.0117 0.0097 0.0079 0.0064 0.0052 0.0042 0.0034 0.0027 0.0021 0.0017 0.0013 0.0010 0.0008 0.0006 0.0005 0.0004 diff --git a/sourcecodes/data/old/example_sci_bk/Lluthr.txt b/sourcecodes/data/old/example_sci_bk/Lluthr.txt new file mode 100644 index 00000000..2eb3c4fe --- /dev/null +++ b/sourcecodes/data/old/example_sci_bk/Lluthr.txt @@ -0,0 +1 @@ +0.5 diff --git a/sourcecodes/data/old/example_sci_bk/Llutier.txt b/sourcecodes/data/old/example_sci_bk/Llutier.txt new file mode 100644 index 00000000..da7084fb --- /dev/null +++ b/sourcecodes/data/old/example_sci_bk/Llutier.txt @@ -0,0 +1 @@ +3,Tier1,1,Genotype,Tier2,3,Gene1,Gene2,Gene3,Tier3,1,Phenotype, \ No newline at end of file diff --git a/sourcecodes/data/old/example_sci_bk/Llutype.txt b/sourcecodes/data/old/example_sci_bk/Llutype.txt new file mode 100644 index 00000000..9ea66ce4 --- /dev/null +++ b/sourcecodes/data/old/example_sci_bk/Llutype.txt @@ -0,0 +1,2 @@ +Genotype Gene3 Gene2 Phenotype Gene1 +2 1 1 1 1 diff --git a/sourcecodes/data/old/example_sci_bk/Lluvar.txt b/sourcecodes/data/old/example_sci_bk/Lluvar.txt new file mode 100644 index 00000000..56a6051c --- /dev/null +++ b/sourcecodes/data/old/example_sci_bk/Lluvar.txt @@ -0,0 +1 @@ +1 \ No newline at end of file diff --git a/sourcecodes/data/old/example_sci_bk/Lluvardata.txt b/sourcecodes/data/old/example_sci_bk/Lluvardata.txt new file mode 100644 index 00000000..56a6051c --- /dev/null +++ b/sourcecodes/data/old/example_sci_bk/Lluvardata.txt @@ -0,0 +1 @@ +1 \ No newline at end of file diff --git a/sourcecodes/data/old/example_sci_bk/Lluvarname.txt b/sourcecodes/data/old/example_sci_bk/Lluvarname.txt new file mode 100644 index 00000000..3fe283bd --- /dev/null +++ b/sourcecodes/data/old/example_sci_bk/Lluvarname.txt @@ -0,0 +1 @@ +Genotype \ No newline at end of file diff --git a/sourcecodes/data/old/example_sci_bk/Lluwhite.txt b/sourcecodes/data/old/example_sci_bk/Lluwhite.txt new file mode 100644 index 00000000..83e81b8b --- /dev/null +++ b/sourcecodes/data/old/example_sci_bk/Lluwhite.txt @@ -0,0 +1 @@ +From To diff --git a/sourcecodes/data/old/example_sci_bk/old/Llurun_evidencemodified.sh b/sourcecodes/data/old/example_sci_bk/old/Llurun_evidencemodified.sh new file mode 100644 index 00000000..ee0dde13 --- /dev/null +++ b/sourcecodes/data/old/example_sci_bk/old/Llurun_evidencemodified.sh @@ -0,0 +1,38 @@ +#!/bin/sh +# script for execution of deployed applications +# +# Sets up the MCR environment for the current $ARCH and executes +# the specified command. +# +exe_name=$0 +exe_dir=`dirname "$0"` +echo "------------------------------------------" +if [ "x$1" = "x" ]; then + echo Usage: + echo $0 \<deployedMCRroot\> args +else + echo Setting up environment variables + MCRROOT="$1" + echo --- + LD_LIBRARY_PATH=.:${MCRROOT}/runtime/glnxa64 ; + LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${MCRROOT}/bin/glnxa64 ; + LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${MCRROOT}/sys/os/glnxa64; + MCRJRE=${MCRROOT}/sys/java/jre/glnxa64/jre/lib/amd64 ; + LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${MCRJRE}/native_threads ; + LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${MCRJRE}/server ; + LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${MCRJRE}/client ; + LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${MCRJRE} ; + XAPPLRESDIR=${MCRROOT}/X11/app-defaults ; + export LD_LIBRARY_PATH; + export XAPPLRESDIR; + echo LD_LIBRARY_PATH is ${LD_LIBRARY_PATH}; + shift 1 + args= + while [ $# -gt 0 ]; do + token=`echo "$1" | sed 's/ /\\\\ /g'` # Add blackslash before each blank + args="${args} ${token}" + shift + done + "${exe_dir}"/evidencemodified Llu +fi +exit diff --git a/sourcecodes/data/old/example_sci_bk/old/Llurun_initialstructure.sh b/sourcecodes/data/old/example_sci_bk/old/Llurun_initialstructure.sh new file mode 100644 index 00000000..adde14dd --- /dev/null +++ b/sourcecodes/data/old/example_sci_bk/old/Llurun_initialstructure.sh @@ -0,0 +1,38 @@ +#!/bin/sh +# script for execution of deployed applications +# +# Sets up the MCR environment for the current $ARCH and executes +# the specified command. +# +exe_name=$0 +exe_dir=`dirname "$0"` +echo "------------------------------------------" +if [ "x$1" = "x" ]; then + echo Usage: + echo $0 \<deployedMCRroot\> args +else + echo Setting up environment variables + MCRROOT="$1" + echo --- + LD_LIBRARY_PATH=.:${MCRROOT}/runtime/glnxa64 ; + LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${MCRROOT}/bin/glnxa64 ; + LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${MCRROOT}/sys/os/glnxa64; + MCRJRE=${MCRROOT}/sys/java/jre/glnxa64/jre/lib/amd64 ; + LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${MCRJRE}/native_threads ; + LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${MCRJRE}/server ; + LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${MCRJRE}/client ; + LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${MCRJRE} ; + XAPPLRESDIR=${MCRROOT}/X11/app-defaults ; + export LD_LIBRARY_PATH; + export XAPPLRESDIR; + echo LD_LIBRARY_PATH is ${LD_LIBRARY_PATH}; + shift 1 + args= + while [ $# -gt 0 ]; do + token=`echo "$1" | sed 's/ /\\\\ /g'` # Add blackslash before each blank + args="${args} ${token}" + shift + done + "${exe_dir}"/initialstructure Llu +fi +exit |