GENENET8 update

1 files changed, 15 insertions, 9 deletions

diff --git a/sourcecodes/run.sh b/sourcecodes/run.sh
index 95e5f417..344b7591 100644
--- a/sourcecodes/run.sh
+++ b/sourcecodes/run.sh
@@ -1,20 +1,26 @@
 #!/bin/bash
-d=`dirname $0`
+#d=`dirname $0`
 #ess=1
-DIR="$d/data/$1"
-DIR_1="$d/data/$1/"
+#DIR="$d/data/$1"
+#DIR_1="$d/data/$1/"
+cd /var/lib/genenet/bnw
 
-mkdir -p $DIR
+
+mkdir -p /var/lib/genenet/bnw/$1
 
 maxparent=$2
 k=$3
 THR=$4
 
-./network_score $d/data/$1continuous_input.txt $d/data/$1ban.txt $d/data/$1white.txt $maxparent $DIR
+./network_score /var/lib/genenet/bnw/$1continuous_input.txt /var/lib/genenet/bnw/$1ban.txt /var/lib/genenet/bnw/$1white.txt $maxparent /var/lib/genenet/bnw/$1
+
+./k-best/src/data2netk_poster.sh /var/lib/genenet/bnw/$1continuous_input.txt /var/lib/genenet/bnw/$1 $k $maxparent
 
-$d/k-best/src/data2netk_poster.sh $d/data/$1continuous_input.txt $DIR $k $maxparent
+./structure /var/lib/genenet/bnw/$1continuous_input.txt /var/lib/genenet/bnw/$1/postProbEachEdge.txt /var/lib/genenet/bnw/$1structure_input_temp.txt /var/lib/genenet/bnw/$1structure_input.txt $THR
 
-./structure $d/data/$1continuous_input.txt $DIR/postProbEachEdge.txt $d/data/$1structure_input_temp.txt $d/data/$1structure_input.txt $THR
+rm -r /var/lib/genenet/bnw/$1
 
-rm -r $DIR_1*
-rmdir $DIR
+if [ $k = 1 ]
+then
+    rm -r /var/lib/genenet/bnw/$1structure_input_temp.txt
+fi