BNW using Octave instead of Matlab.

This version of BNW should perform the same as the original version. The only difference is that it uses Octave instead of Matlab when running BayesNet Toolbox during parameter learning.

I am calling this BNW_1.02. It can be accessed at:
compbio.uthsc.edu/BNW_1.02

6 files changed, 108 insertions, 0 deletions

diff --git a/sourcecodes/data/old/Backupfiles/evidencemodified b/sourcecodes/data/old/Backupfiles/evidencemodified
new file mode 100644
index 00000000..9b3f7563
--- /dev/null
+++ b/sourcecodes/data/old/Backupfiles/evidencemodified
Binary files differdiff --git a/sourcecodes/data/old/Backupfiles/initialstructure b/sourcecodes/data/old/Backupfiles/initialstructure
new file mode 100644
index 00000000..9ecf1bc7
--- /dev/null
+++ b/sourcecodes/data/old/Backupfiles/initialstructure
Binary files differdiff --git a/sourcecodes/data/old/Backupfiles/newintervention b/sourcecodes/data/old/Backupfiles/newintervention
new file mode 100644
index 00000000..d818a943
--- /dev/null
+++ b/sourcecodes/data/old/Backupfiles/newintervention
Binary files differdiff --git a/sourcecodes/data/old/Backupfiles/temp_evidence_file b/sourcecodes/data/old/Backupfiles/temp_evidence_file
new file mode 100644
index 00000000..b687ceaf
--- /dev/null
+++ b/sourcecodes/data/old/Backupfiles/temp_evidence_file
@@ -0,0 +1,36 @@
+#!/bin/sh
+# script for execution of deployed applications
+#
+# Sets up the MCR environment for the current $ARCH and executes 
+# the specified command.
+#
+exe_name=$0
+exe_dir=`dirname "$0"`
+echo "------------------------------------------"
+if [ "x$1" = "x" ]; then
+  echo Usage:
+  echo    $0 \<deployedMCRroot\> args
+else
+  echo Setting up environment variables
+  MCRROOT="$1"
+  echo ---
+  LD_LIBRARY_PATH=.:${MCRROOT}/runtime/glnxa64 ;
+  LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${MCRROOT}/bin/glnxa64 ;
+  LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${MCRROOT}/sys/os/glnxa64;
+	MCRJRE=${MCRROOT}/sys/java/jre/glnxa64/jre/lib/amd64 ;
+	LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${MCRJRE}/native_threads ; 
+	LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${MCRJRE}/server ;
+	LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${MCRJRE}/client ;
+	LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${MCRJRE} ;  
+  XAPPLRESDIR=${MCRROOT}/X11/app-defaults ;
+  export LD_LIBRARY_PATH;
+  export XAPPLRESDIR;
+  echo LD_LIBRARY_PATH is ${LD_LIBRARY_PATH};
+  shift 1
+  args=
+  while [ $# -gt 0 ]; do
+      token=`echo "$1" | sed 's/ /\\\\ /g'`   # Add blackslash before each blank
+      args="${args} ${token}" 
+      shift
+  done
+  "${exe_dir}"/evidencemodified 
\ No newline at end of file
diff --git a/sourcecodes/data/old/Backupfiles/temp_intervention_file b/sourcecodes/data/old/Backupfiles/temp_intervention_file
new file mode 100644
index 00000000..cdf5ce0f
--- /dev/null
+++ b/sourcecodes/data/old/Backupfiles/temp_intervention_file
@@ -0,0 +1,36 @@
+#!/bin/sh
+# script for execution of deployed applications
+#
+# Sets up the MCR environment for the current $ARCH and executes 
+# the specified command.
+#
+exe_name=$0
+exe_dir=`dirname "$0"`
+echo "------------------------------------------"
+if [ "x$1" = "x" ]; then
+  echo Usage:
+  echo    $0 \<deployedMCRroot\> args
+else
+  echo Setting up environment variables
+  MCRROOT="$1"
+  echo ---
+  LD_LIBRARY_PATH=.:${MCRROOT}/runtime/glnxa64 ;
+  LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${MCRROOT}/bin/glnxa64 ;
+  LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${MCRROOT}/sys/os/glnxa64;
+	MCRJRE=${MCRROOT}/sys/java/jre/glnxa64/jre/lib/amd64 ;
+	LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${MCRJRE}/native_threads ; 
+	LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${MCRJRE}/server ;
+	LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${MCRJRE}/client ;
+	LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${MCRJRE} ;  
+  XAPPLRESDIR=${MCRROOT}/X11/app-defaults ;
+  export LD_LIBRARY_PATH;
+  export XAPPLRESDIR;
+  echo LD_LIBRARY_PATH is ${LD_LIBRARY_PATH};
+  shift 1
+  args=
+  while [ $# -gt 0 ]; do
+      token=`echo "$1" | sed 's/ /\\\\ /g'`   # Add blackslash before each blank
+      args="${args} ${token}" 
+      shift
+  done
+  "${exe_dir}"/newintervention 
\ No newline at end of file
diff --git a/sourcecodes/data/old/Backupfiles/temp_shell_file_initial_structure b/sourcecodes/data/old/Backupfiles/temp_shell_file_initial_structure
new file mode 100644
index 00000000..5d1c323d
--- /dev/null
+++ b/sourcecodes/data/old/Backupfiles/temp_shell_file_initial_structure
@@ -0,0 +1,36 @@
+#!/bin/sh
+# script for execution of deployed applications
+#
+# Sets up the MCR environment for the current $ARCH and executes 
+# the specified command.
+#
+exe_name=$0
+exe_dir=`dirname "$0"`
+echo "------------------------------------------"
+if [ "x$1" = "x" ]; then
+  echo Usage:
+  echo    $0 \<deployedMCRroot\> args
+else
+  echo Setting up environment variables
+  MCRROOT="$1"
+  echo ---
+  LD_LIBRARY_PATH=.:${MCRROOT}/runtime/glnxa64 ;
+  LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${MCRROOT}/bin/glnxa64 ;
+  LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${MCRROOT}/sys/os/glnxa64;
+	MCRJRE=${MCRROOT}/sys/java/jre/glnxa64/jre/lib/amd64 ;
+	LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${MCRJRE}/native_threads ; 
+	LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${MCRJRE}/server ;
+	LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${MCRJRE}/client ;
+	LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${MCRJRE} ;  
+  XAPPLRESDIR=${MCRROOT}/X11/app-defaults ;
+  export LD_LIBRARY_PATH;
+  export XAPPLRESDIR;
+  echo LD_LIBRARY_PATH is ${LD_LIBRARY_PATH};
+  shift 1
+  args=
+  while [ $# -gt 0 ]; do
+      token=`echo "$1" | sed 's/ /\\\\ /g'`   # Add blackslash before each blank
+      args="${args} ${token}" 
+      shift
+  done
+  "${exe_dir}"/initialstructure 
\ No newline at end of file