From 8070dc963753142bb86c4ed698d91fd623ed28e7 Mon Sep 17 00:00:00 2001
From: ziejd2
Date: Thu, 28 Sep 2017 15:04:40 -0500
Subject: BNW using Octave instead of Matlab.

This version of BNW should perform the same as the original version. The only difference is that it uses Octave instead of Matlab when running BayesNet Toolbox during parameter learning.

I am calling this BNW_1.02. It can be accessed at:
compbio.uthsc.edu/BNW_1.02
---
 sourcecodes/data/old/Backupfiles/evidencemodified  | Bin 0 -> 452271 bytes
 sourcecodes/data/old/Backupfiles/initialstructure  | Bin 0 -> 452404 bytes
 sourcecodes/data/old/Backupfiles/newintervention   | Bin 0 -> 452401 bytes
 .../data/old/Backupfiles/temp_evidence_file        |  36 +++++++++++++++++++++
 .../data/old/Backupfiles/temp_intervention_file    |  36 +++++++++++++++++++++
 .../Backupfiles/temp_shell_file_initial_structure  |  36 +++++++++++++++++++++
 6 files changed, 108 insertions(+)
 create mode 100644 sourcecodes/data/old/Backupfiles/evidencemodified
 create mode 100644 sourcecodes/data/old/Backupfiles/initialstructure
 create mode 100644 sourcecodes/data/old/Backupfiles/newintervention
 create mode 100644 sourcecodes/data/old/Backupfiles/temp_evidence_file
 create mode 100644 sourcecodes/data/old/Backupfiles/temp_intervention_file
 create mode 100644 sourcecodes/data/old/Backupfiles/temp_shell_file_initial_structure

(limited to 'sourcecodes/data/old/Backupfiles')

diff --git a/sourcecodes/data/old/Backupfiles/evidencemodified b/sourcecodes/data/old/Backupfiles/evidencemodified
new file mode 100644
index 00000000..9b3f7563
Binary files /dev/null and b/sourcecodes/data/old/Backupfiles/evidencemodified differ
diff --git a/sourcecodes/data/old/Backupfiles/initialstructure b/sourcecodes/data/old/Backupfiles/initialstructure
new file mode 100644
index 00000000..9ecf1bc7
Binary files /dev/null and b/sourcecodes/data/old/Backupfiles/initialstructure differ
diff --git a/sourcecodes/data/old/Backupfiles/newintervention b/sourcecodes/data/old/Backupfiles/newintervention
new file mode 100644
index 00000000..d818a943
Binary files /dev/null and b/sourcecodes/data/old/Backupfiles/newintervention differ
diff --git a/sourcecodes/data/old/Backupfiles/temp_evidence_file b/sourcecodes/data/old/Backupfiles/temp_evidence_file
new file mode 100644
index 00000000..b687ceaf
--- /dev/null
+++ b/sourcecodes/data/old/Backupfiles/temp_evidence_file
@@ -0,0 +1,36 @@
+#!/bin/sh
+# script for execution of deployed applications
+#
+# Sets up the MCR environment for the current $ARCH and executes 
+# the specified command.
+#
+exe_name=$0
+exe_dir=`dirname "$0"`
+echo "------------------------------------------"
+if [ "x$1" = "x" ]; then
+  echo Usage:
+  echo    $0 \<deployedMCRroot\> args
+else
+  echo Setting up environment variables
+  MCRROOT="$1"
+  echo ---
+  LD_LIBRARY_PATH=.:${MCRROOT}/runtime/glnxa64 ;
+  LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${MCRROOT}/bin/glnxa64 ;
+  LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${MCRROOT}/sys/os/glnxa64;
+	MCRJRE=${MCRROOT}/sys/java/jre/glnxa64/jre/lib/amd64 ;
+	LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${MCRJRE}/native_threads ; 
+	LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${MCRJRE}/server ;
+	LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${MCRJRE}/client ;
+	LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${MCRJRE} ;  
+  XAPPLRESDIR=${MCRROOT}/X11/app-defaults ;
+  export LD_LIBRARY_PATH;
+  export XAPPLRESDIR;
+  echo LD_LIBRARY_PATH is ${LD_LIBRARY_PATH};
+  shift 1
+  args=
+  while [ $# -gt 0 ]; do
+      token=`echo "$1" | sed 's/ /\\\\ /g'`   # Add blackslash before each blank
+      args="${args} ${token}" 
+      shift
+  done
+  "${exe_dir}"/evidencemodified 
\ No newline at end of file
diff --git a/sourcecodes/data/old/Backupfiles/temp_intervention_file b/sourcecodes/data/old/Backupfiles/temp_intervention_file
new file mode 100644
index 00000000..cdf5ce0f
--- /dev/null
+++ b/sourcecodes/data/old/Backupfiles/temp_intervention_file
@@ -0,0 +1,36 @@
+#!/bin/sh
+# script for execution of deployed applications
+#
+# Sets up the MCR environment for the current $ARCH and executes 
+# the specified command.
+#
+exe_name=$0
+exe_dir=`dirname "$0"`
+echo "------------------------------------------"
+if [ "x$1" = "x" ]; then
+  echo Usage:
+  echo    $0 \<deployedMCRroot\> args
+else
+  echo Setting up environment variables
+  MCRROOT="$1"
+  echo ---
+  LD_LIBRARY_PATH=.:${MCRROOT}/runtime/glnxa64 ;
+  LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${MCRROOT}/bin/glnxa64 ;
+  LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${MCRROOT}/sys/os/glnxa64;
+	MCRJRE=${MCRROOT}/sys/java/jre/glnxa64/jre/lib/amd64 ;
+	LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${MCRJRE}/native_threads ; 
+	LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${MCRJRE}/server ;
+	LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${MCRJRE}/client ;
+	LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${MCRJRE} ;  
+  XAPPLRESDIR=${MCRROOT}/X11/app-defaults ;
+  export LD_LIBRARY_PATH;
+  export XAPPLRESDIR;
+  echo LD_LIBRARY_PATH is ${LD_LIBRARY_PATH};
+  shift 1
+  args=
+  while [ $# -gt 0 ]; do
+      token=`echo "$1" | sed 's/ /\\\\ /g'`   # Add blackslash before each blank
+      args="${args} ${token}" 
+      shift
+  done
+  "${exe_dir}"/newintervention 
\ No newline at end of file
diff --git a/sourcecodes/data/old/Backupfiles/temp_shell_file_initial_structure b/sourcecodes/data/old/Backupfiles/temp_shell_file_initial_structure
new file mode 100644
index 00000000..5d1c323d
--- /dev/null
+++ b/sourcecodes/data/old/Backupfiles/temp_shell_file_initial_structure
@@ -0,0 +1,36 @@
+#!/bin/sh
+# script for execution of deployed applications
+#
+# Sets up the MCR environment for the current $ARCH and executes 
+# the specified command.
+#
+exe_name=$0
+exe_dir=`dirname "$0"`
+echo "------------------------------------------"
+if [ "x$1" = "x" ]; then
+  echo Usage:
+  echo    $0 \<deployedMCRroot\> args
+else
+  echo Setting up environment variables
+  MCRROOT="$1"
+  echo ---
+  LD_LIBRARY_PATH=.:${MCRROOT}/runtime/glnxa64 ;
+  LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${MCRROOT}/bin/glnxa64 ;
+  LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${MCRROOT}/sys/os/glnxa64;
+	MCRJRE=${MCRROOT}/sys/java/jre/glnxa64/jre/lib/amd64 ;
+	LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${MCRJRE}/native_threads ; 
+	LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${MCRJRE}/server ;
+	LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${MCRJRE}/client ;
+	LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${MCRJRE} ;  
+  XAPPLRESDIR=${MCRROOT}/X11/app-defaults ;
+  export LD_LIBRARY_PATH;
+  export XAPPLRESDIR;
+  echo LD_LIBRARY_PATH is ${LD_LIBRARY_PATH};
+  shift 1
+  args=
+  while [ $# -gt 0 ]; do
+      token=`echo "$1" | sed 's/ /\\\\ /g'`   # Add blackslash before each blank
+      args="${args} ${token}" 
+      shift
+  done
+  "${exe_dir}"/initialstructure 
\ No newline at end of file
-- 
cgit 1.4.1