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| author | ziejd2 | 2017-09-14 15:39:41 -0500 |
|---|---|---|
| committer | ziejd2 | 2017-09-14 15:57:50 -0500 |
| commit | c4f926438dcb8abe805e910399940f79ff643c4b (patch) | |
| tree | 3146d05ada5cf4b48d9bdd16c1baa498e8df7192 /sourcecodes/data/example_chl | |
| parent | 57ebf49403b75dcf8482d174b59f7fd2a961d98e (diff) | |
| download | BNW-c4f926438dcb8abe805e910399940f79ff643c4b.tar.gz | |
Add files via upload
Diffstat (limited to 'sourcecodes/data/example_chl')
| -rw-r--r-- | sourcecodes/data/example_chl/bWRcontinuous_input.txt | 44 | ||||
| -rw-r--r-- | sourcecodes/data/example_chl/bWRgraphviz.txt | 11 | ||||
| -rw-r--r-- | sourcecodes/data/example_chl/bWRmap.txt | 5 | ||||
| -rw-r--r-- | sourcecodes/data/example_chl/bWRmapdata.txt | 1 | ||||
| -rw-r--r-- | sourcecodes/data/example_chl/bWRname.txt | 1 | ||||
| -rw-r--r-- | sourcecodes/data/example_chl/bWRnet_figure.txt | 433 | ||||
| -rw-r--r-- | sourcecodes/data/example_chl/bWRnet_figure_new.txt | 433 | ||||
| -rw-r--r-- | sourcecodes/data/example_chl/bWRnlevels.txt | 2 | ||||
| -rw-r--r-- | sourcecodes/data/example_chl/bWRnnode.txt | 1 | ||||
| -rw-r--r-- | sourcecodes/data/example_chl/bWRrun_evidencemodified.sh | 38 | ||||
| -rw-r--r-- | sourcecodes/data/example_chl/bWRrun_initialstructure.sh | 38 | ||||
| -rw-r--r-- | sourcecodes/data/example_chl/bWRstructure_input.txt | 7 | ||||
| -rw-r--r-- | sourcecodes/data/example_chl/bWRstructure_old.txt | 5 | ||||
| -rw-r--r-- | sourcecodes/data/example_chl/bWRtype.txt | 2 | ||||
| -rw-r--r-- | sourcecodes/data/example_chl/bWRvar.txt | 1 | ||||
| -rw-r--r-- | sourcecodes/data/example_chl/bWRvardata.txt | 1 | ||||
| -rw-r--r-- | sourcecodes/data/example_chl/bWRvarname.txt | 1 |
17 files changed, 1024 insertions, 0 deletions
diff --git a/sourcecodes/data/example_chl/bWRcontinuous_input.txt b/sourcecodes/data/example_chl/bWRcontinuous_input.txt new file mode 100644 index 00000000..cf674ffd --- /dev/null +++ b/sourcecodes/data/example_chl/bWRcontinuous_input.txt @@ -0,0 +1,44 @@ +Ctrq3 MAS Neutrophil Load Weight +2 1 1 1 1 +2 0.969230769 3 3.252367514 1 +2 0.925170068 1.6 2.46322088 1.033472803 +1 0.427272727 33.8 4.206610024 0.831372549 +2 0.877835951 8.3 3.764250875 0.967153285 +2 0.914862915 4.4 3.691700208 1.046025105 +2 0.560334528 4.9 2.604550033 0.98046875 +1 0.383073497 13.1 4.273556814 0.812316716 +1 0.101010101 18.6 5.089640217 0.771929825 +1 0.106719368 18.9 4.915125346 0.80994152 +2 0.894736842 2.5 2.691700208 0.995515695 +1 0.067226891 19.8 4.878194228 0.846153846 +2 0.921022067 2.9 4.127428778 1.03875969 +2 0.938701923 0.7 4.366310867 0.984732824 +1 0.658008658 15.7 4.531121115 0.884210526 +2 0.9 4.8 2.604550033 0.913194444 +2 0.790923825 10.4 2.390670213 0.892857143 +1 0.295539033 8.6 4.24137213 0.85840708 +2 0.317757009 12.2 4.449648073 0.889830508 +1 0.032418953 20.2 5.053428044 0.811320755 +1 0.603960396 23.4 4.283775979 0.805460751 +2 0.939351199 3.6 2.349277527 0.952380952 +1 0.978448276 0.4 3.495405563 0.8875 +1 0.1 23.2 4.675613388 0.766101695 +1 0.036363636 32.6 4.938109253 0.828125 +1 0.660247593 9.2 3.826398782 0.921052632 +1 0.078651685 35.8 4.513630383 0.852112676 +1 0.186915888 20.7 5.048247532 0.779761905 +1 0.071578947 35.6 4.574586809 0.797356828 +1 0.239520958 15.4 4.331548761 0.941176471 +1 0.205741627 24.5 5.058547488 0.774193548 +1 0.062300319 13.4 4.594790195 0.832236842 +2 0.599675851 5 4.18178644 0.969348659 +1 0.324246772 13.5 4.252367514 0.858585859 +1 0.87628866 14.2 2.929061124 0.869863014 +1 0.146103896 15.6 4.579726449 0.9 +1 0.257383966 22.5 5.210214148 0.75 +1 0.033333333 31.1 4.632578756 0.718644068 +1 0.29739777 36.1 3.880756445 0.798353909 +2 0.872979215 4.2 4.097465554 0.856756757 +2 0.909221902 4.3 3.650307523 0.976 +1 0.10041841 28.3 4.46322088 0.757462687 + diff --git a/sourcecodes/data/example_chl/bWRgraphviz.txt b/sourcecodes/data/example_chl/bWRgraphviz.txt new file mode 100644 index 00000000..2cd4e8cd --- /dev/null +++ b/sourcecodes/data/example_chl/bWRgraphviz.txt @@ -0,0 +1,11 @@ +digraph G { +size="10,10"; ratio = fill; +node [shape=square,width=1.5]; +Ctrq3 -> MAS; +Ctrq3 -> Neutrophil; +Ctrq3 -> Load; +Ctrq3 -> Weight; +MAS -> Neutrophil; +MAS -> Load; +Neutrophil -> Weight; +} \ No newline at end of file diff --git a/sourcecodes/data/example_chl/bWRmap.txt b/sourcecodes/data/example_chl/bWRmap.txt new file mode 100644 index 00000000..b872d2f0 --- /dev/null +++ b/sourcecodes/data/example_chl/bWRmap.txt @@ -0,0 +1,5 @@ +Ctrq3 2 0.487652 1.365854 +MAS 1 0.355012 0.479560 +Neutrophil 1 10.929756 15.048780 +Load 1 0.825354 4.077143 +Weight 1 0.088036 0.877077 diff --git a/sourcecodes/data/example_chl/bWRmapdata.txt b/sourcecodes/data/example_chl/bWRmapdata.txt new file mode 100644 index 00000000..ce5416ce --- /dev/null +++ b/sourcecodes/data/example_chl/bWRmapdata.txt @@ -0,0 +1 @@ +Ctrq3 MAS Load Neutrophil Weight diff --git a/sourcecodes/data/example_chl/bWRname.txt b/sourcecodes/data/example_chl/bWRname.txt new file mode 100644 index 00000000..48018335 --- /dev/null +++ b/sourcecodes/data/example_chl/bWRname.txt @@ -0,0 +1 @@ +Ctrq3 MAS Neutrophil Load Weight diff --git a/sourcecodes/data/example_chl/bWRnet_figure.txt b/sourcecodes/data/example_chl/bWRnet_figure.txt new file mode 100644 index 00000000..1798da4f --- /dev/null +++ b/sourcecodes/data/example_chl/bWRnet_figure.txt @@ -0,0 +1,433 @@ +5 +1200 1200 +Ctrq3 200 0 +MAS 320 240 +Load 0 480 +Neutrophil 400 480 +Weight 320 720 +Ctrq3 2 +250 150 +0 +4 2 3 4 5 +1 0.6341 +2 0.3659 +MAS 1 +250 150 +1 1 +2 3 4 +-2.2595 0.0292 +-2.2129 0.0326 +-2.1662 0.0362 +-2.1196 0.0401 +-2.0729 0.0443 +-2.0263 0.0489 +-1.9796 0.0539 +-1.9330 0.0592 +-1.8863 0.0648 +-1.8397 0.0709 +-1.7930 0.0774 +-1.7464 0.0842 +-1.6997 0.0915 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b/sourcecodes/data/example_chl/bWRnlevels.txt new file mode 100644 index 00000000..9f618060 --- /dev/null +++ b/sourcecodes/data/example_chl/bWRnlevels.txt @@ -0,0 +1,2 @@ +Ctrq3 1 2 + diff --git a/sourcecodes/data/example_chl/bWRnnode.txt b/sourcecodes/data/example_chl/bWRnnode.txt new file mode 100644 index 00000000..7ed6ff82 --- /dev/null +++ b/sourcecodes/data/example_chl/bWRnnode.txt @@ -0,0 +1 @@ +5 diff --git a/sourcecodes/data/example_chl/bWRrun_evidencemodified.sh b/sourcecodes/data/example_chl/bWRrun_evidencemodified.sh new file mode 100644 index 00000000..763a268b --- /dev/null +++ b/sourcecodes/data/example_chl/bWRrun_evidencemodified.sh @@ -0,0 +1,38 @@ +#!/bin/sh +# script for execution of deployed applications +# +# Sets up the MCR environment for the current $ARCH and executes +# the specified command. +# +exe_name=$0 +exe_dir=`dirname "$0"` +echo "------------------------------------------" +if [ "x$1" = "x" ]; then + echo Usage: + echo $0 \<deployedMCRroot\> args +else + echo Setting up environment variables + MCRROOT="$1" + echo --- + LD_LIBRARY_PATH=.:${MCRROOT}/runtime/glnxa64 ; + LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${MCRROOT}/bin/glnxa64 ; + LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${MCRROOT}/sys/os/glnxa64; + MCRJRE=${MCRROOT}/sys/java/jre/glnxa64/jre/lib/amd64 ; + LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${MCRJRE}/native_threads ; + LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${MCRJRE}/server ; + LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${MCRJRE}/client ; + LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${MCRJRE} ; + XAPPLRESDIR=${MCRROOT}/X11/app-defaults ; + export LD_LIBRARY_PATH; + export XAPPLRESDIR; + echo LD_LIBRARY_PATH is ${LD_LIBRARY_PATH}; + shift 1 + args= + while [ $# -gt 0 ]; do + token=`echo "$1" | sed 's/ /\\\\ /g'` # Add blackslash before each blank + args="${args} ${token}" + shift + done + "${exe_dir}"/evidencemodified bWR +fi +exit diff --git a/sourcecodes/data/example_chl/bWRrun_initialstructure.sh b/sourcecodes/data/example_chl/bWRrun_initialstructure.sh new file mode 100644 index 00000000..3725f758 --- /dev/null +++ b/sourcecodes/data/example_chl/bWRrun_initialstructure.sh @@ -0,0 +1,38 @@ +#!/bin/sh +# script for execution of deployed applications +# +# Sets up the MCR environment for the current $ARCH and executes +# the specified command. +# +exe_name=$0 +exe_dir=`dirname "$0"` +echo "------------------------------------------" +if [ "x$1" = "x" ]; then + echo Usage: + echo $0 \<deployedMCRroot\> args +else + echo Setting up environment variables + MCRROOT="$1" + echo --- + LD_LIBRARY_PATH=.:${MCRROOT}/runtime/glnxa64 ; + LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${MCRROOT}/bin/glnxa64 ; + LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${MCRROOT}/sys/os/glnxa64; + MCRJRE=${MCRROOT}/sys/java/jre/glnxa64/jre/lib/amd64 ; + LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${MCRJRE}/native_threads ; + LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${MCRJRE}/server ; + LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${MCRJRE}/client ; + LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${MCRJRE} ; + XAPPLRESDIR=${MCRROOT}/X11/app-defaults ; + export LD_LIBRARY_PATH; + export XAPPLRESDIR; + echo LD_LIBRARY_PATH is ${LD_LIBRARY_PATH}; + shift 1 + args= + while [ $# -gt 0 ]; do + token=`echo "$1" | sed 's/ /\\\\ /g'` # Add blackslash before each blank + args="${args} ${token}" + shift + done + "${exe_dir}"/initialstructure bWR +fi +exit diff --git a/sourcecodes/data/example_chl/bWRstructure_input.txt b/sourcecodes/data/example_chl/bWRstructure_input.txt new file mode 100644 index 00000000..efa98e06 --- /dev/null +++ b/sourcecodes/data/example_chl/bWRstructure_input.txt @@ -0,0 +1,7 @@ +Ctrq3 MAS Neutrophil Load Weight +0 1 1 1 1 +0 0 1 1 0 +0 0 0 0 1 +0 0 0 0 0 +0 0 0 0 0 + diff --git a/sourcecodes/data/example_chl/bWRstructure_old.txt b/sourcecodes/data/example_chl/bWRstructure_old.txt new file mode 100644 index 00000000..a6aed858 --- /dev/null +++ b/sourcecodes/data/example_chl/bWRstructure_old.txt @@ -0,0 +1,5 @@ +Ctrq3 0.6341 0.3659 +MAS 0.0292 0.0326 0.0362 0.0401 0.0443 0.0489 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b/sourcecodes/data/example_chl/bWRtype.txt @@ -0,0 +1,2 @@ +Ctrq3 MAS Neutrophil Load Weight +2 1 1 1 1 diff --git a/sourcecodes/data/example_chl/bWRvar.txt b/sourcecodes/data/example_chl/bWRvar.txt new file mode 100644 index 00000000..56a6051c --- /dev/null +++ b/sourcecodes/data/example_chl/bWRvar.txt @@ -0,0 +1 @@ +1 \ No newline at end of file diff --git a/sourcecodes/data/example_chl/bWRvardata.txt b/sourcecodes/data/example_chl/bWRvardata.txt new file mode 100644 index 00000000..56a6051c --- /dev/null +++ b/sourcecodes/data/example_chl/bWRvardata.txt @@ -0,0 +1 @@ +1 \ No newline at end of file diff --git a/sourcecodes/data/example_chl/bWRvarname.txt b/sourcecodes/data/example_chl/bWRvarname.txt new file mode 100644 index 00000000..6ef2df09 --- /dev/null +++ b/sourcecodes/data/example_chl/bWRvarname.txt @@ -0,0 +1 @@ +Ctrq3 \ No newline at end of file |
