From c4f926438dcb8abe805e910399940f79ff643c4b Mon Sep 17 00:00:00 2001 From: ziejd2 Date: Thu, 14 Sep 2017 15:39:41 -0500 Subject: Add files via upload --- .../data/example_chl/bWRcontinuous_input.txt | 44 +++ sourcecodes/data/example_chl/bWRgraphviz.txt | 11 + sourcecodes/data/example_chl/bWRmap.txt | 5 + sourcecodes/data/example_chl/bWRmapdata.txt | 1 + sourcecodes/data/example_chl/bWRname.txt | 1 + sourcecodes/data/example_chl/bWRnet_figure.txt | 433 +++++++++++++++++++++ sourcecodes/data/example_chl/bWRnet_figure_new.txt | 433 +++++++++++++++++++++ sourcecodes/data/example_chl/bWRnlevels.txt | 2 + sourcecodes/data/example_chl/bWRnnode.txt | 1 + .../data/example_chl/bWRrun_evidencemodified.sh | 38 ++ .../data/example_chl/bWRrun_initialstructure.sh | 38 ++ .../data/example_chl/bWRstructure_input.txt | 7 + sourcecodes/data/example_chl/bWRstructure_old.txt | 5 + sourcecodes/data/example_chl/bWRtype.txt | 2 + sourcecodes/data/example_chl/bWRvar.txt | 1 + sourcecodes/data/example_chl/bWRvardata.txt | 1 + sourcecodes/data/example_chl/bWRvarname.txt | 1 + 17 files changed, 1024 insertions(+) create mode 100644 sourcecodes/data/example_chl/bWRcontinuous_input.txt create mode 100644 sourcecodes/data/example_chl/bWRgraphviz.txt create mode 100644 sourcecodes/data/example_chl/bWRmap.txt create mode 100644 sourcecodes/data/example_chl/bWRmapdata.txt create mode 100644 sourcecodes/data/example_chl/bWRname.txt create mode 100644 sourcecodes/data/example_chl/bWRnet_figure.txt create mode 100644 sourcecodes/data/example_chl/bWRnet_figure_new.txt create mode 100644 sourcecodes/data/example_chl/bWRnlevels.txt create mode 100644 sourcecodes/data/example_chl/bWRnnode.txt create mode 100644 sourcecodes/data/example_chl/bWRrun_evidencemodified.sh create mode 100644 sourcecodes/data/example_chl/bWRrun_initialstructure.sh create mode 100644 sourcecodes/data/example_chl/bWRstructure_input.txt create mode 100644 sourcecodes/data/example_chl/bWRstructure_old.txt create mode 100644 sourcecodes/data/example_chl/bWRtype.txt create mode 100644 sourcecodes/data/example_chl/bWRvar.txt create mode 100644 sourcecodes/data/example_chl/bWRvardata.txt create mode 100644 sourcecodes/data/example_chl/bWRvarname.txt (limited to 'sourcecodes/data/example_chl') diff --git a/sourcecodes/data/example_chl/bWRcontinuous_input.txt b/sourcecodes/data/example_chl/bWRcontinuous_input.txt new file mode 100644 index 00000000..cf674ffd --- /dev/null +++ b/sourcecodes/data/example_chl/bWRcontinuous_input.txt @@ -0,0 +1,44 @@ +Ctrq3 MAS Neutrophil Load Weight +2 1 1 1 1 +2 0.969230769 3 3.252367514 1 +2 0.925170068 1.6 2.46322088 1.033472803 +1 0.427272727 33.8 4.206610024 0.831372549 +2 0.877835951 8.3 3.764250875 0.967153285 +2 0.914862915 4.4 3.691700208 1.046025105 +2 0.560334528 4.9 2.604550033 0.98046875 +1 0.383073497 13.1 4.273556814 0.812316716 +1 0.101010101 18.6 5.089640217 0.771929825 +1 0.106719368 18.9 4.915125346 0.80994152 +2 0.894736842 2.5 2.691700208 0.995515695 +1 0.067226891 19.8 4.878194228 0.846153846 +2 0.921022067 2.9 4.127428778 1.03875969 +2 0.938701923 0.7 4.366310867 0.984732824 +1 0.658008658 15.7 4.531121115 0.884210526 +2 0.9 4.8 2.604550033 0.913194444 +2 0.790923825 10.4 2.390670213 0.892857143 +1 0.295539033 8.6 4.24137213 0.85840708 +2 0.317757009 12.2 4.449648073 0.889830508 +1 0.032418953 20.2 5.053428044 0.811320755 +1 0.603960396 23.4 4.283775979 0.805460751 +2 0.939351199 3.6 2.349277527 0.952380952 +1 0.978448276 0.4 3.495405563 0.8875 +1 0.1 23.2 4.675613388 0.766101695 +1 0.036363636 32.6 4.938109253 0.828125 +1 0.660247593 9.2 3.826398782 0.921052632 +1 0.078651685 35.8 4.513630383 0.852112676 +1 0.186915888 20.7 5.048247532 0.779761905 +1 0.071578947 35.6 4.574586809 0.797356828 +1 0.239520958 15.4 4.331548761 0.941176471 +1 0.205741627 24.5 5.058547488 0.774193548 +1 0.062300319 13.4 4.594790195 0.832236842 +2 0.599675851 5 4.18178644 0.969348659 +1 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b/sourcecodes/data/example_chl/bWRmap.txt @@ -0,0 +1,5 @@ +Ctrq3 2 0.487652 1.365854 +MAS 1 0.355012 0.479560 +Neutrophil 1 10.929756 15.048780 +Load 1 0.825354 4.077143 +Weight 1 0.088036 0.877077 diff --git a/sourcecodes/data/example_chl/bWRmapdata.txt b/sourcecodes/data/example_chl/bWRmapdata.txt new file mode 100644 index 00000000..ce5416ce --- /dev/null +++ b/sourcecodes/data/example_chl/bWRmapdata.txt @@ -0,0 +1 @@ +Ctrq3 MAS Load Neutrophil Weight diff --git a/sourcecodes/data/example_chl/bWRname.txt b/sourcecodes/data/example_chl/bWRname.txt new file mode 100644 index 00000000..48018335 --- /dev/null +++ b/sourcecodes/data/example_chl/bWRname.txt @@ -0,0 +1 @@ +Ctrq3 MAS Neutrophil Load Weight diff --git a/sourcecodes/data/example_chl/bWRnet_figure.txt b/sourcecodes/data/example_chl/bWRnet_figure.txt new file mode 100644 index 00000000..1798da4f --- /dev/null +++ b/sourcecodes/data/example_chl/bWRnet_figure.txt @@ -0,0 +1,433 @@ +5 +1200 1200 +Ctrq3 200 0 +MAS 320 240 +Load 0 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@@ +#!/bin/sh +# script for execution of deployed applications +# +# Sets up the MCR environment for the current $ARCH and executes +# the specified command. +# +exe_name=$0 +exe_dir=`dirname "$0"` +echo "------------------------------------------" +if [ "x$1" = "x" ]; then + echo Usage: + echo $0 \ args +else + echo Setting up environment variables + MCRROOT="$1" + echo --- + LD_LIBRARY_PATH=.:${MCRROOT}/runtime/glnxa64 ; + LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${MCRROOT}/bin/glnxa64 ; + LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${MCRROOT}/sys/os/glnxa64; + MCRJRE=${MCRROOT}/sys/java/jre/glnxa64/jre/lib/amd64 ; + LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${MCRJRE}/native_threads ; + LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${MCRJRE}/server ; + LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${MCRJRE}/client ; + LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${MCRJRE} ; + XAPPLRESDIR=${MCRROOT}/X11/app-defaults ; + export LD_LIBRARY_PATH; + export XAPPLRESDIR; + echo LD_LIBRARY_PATH is ${LD_LIBRARY_PATH}; + shift 1 + args= + while [ $# -gt 0 ]; do + token=`echo "$1" | sed 's/ /\\\\ /g'` # Add blackslash before each blank + args="${args} ${token}" + shift + done + "${exe_dir}"/evidencemodified bWR +fi +exit diff --git a/sourcecodes/data/example_chl/bWRrun_initialstructure.sh b/sourcecodes/data/example_chl/bWRrun_initialstructure.sh new file mode 100644 index 00000000..3725f758 --- /dev/null +++ b/sourcecodes/data/example_chl/bWRrun_initialstructure.sh @@ -0,0 +1,38 @@ +#!/bin/sh +# script for execution of deployed applications +# +# Sets up the MCR environment for the current $ARCH and executes +# the specified command. +# +exe_name=$0 +exe_dir=`dirname "$0"` +echo "------------------------------------------" +if [ "x$1" = "x" ]; then + echo Usage: + echo $0 \ args +else + echo Setting up environment variables + MCRROOT="$1" + echo --- + LD_LIBRARY_PATH=.:${MCRROOT}/runtime/glnxa64 ; + LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${MCRROOT}/bin/glnxa64 ; + LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${MCRROOT}/sys/os/glnxa64; + MCRJRE=${MCRROOT}/sys/java/jre/glnxa64/jre/lib/amd64 ; + LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${MCRJRE}/native_threads ; + LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${MCRJRE}/server ; + LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${MCRJRE}/client ; + LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${MCRJRE} ; + XAPPLRESDIR=${MCRROOT}/X11/app-defaults ; + export LD_LIBRARY_PATH; + export XAPPLRESDIR; + echo LD_LIBRARY_PATH is ${LD_LIBRARY_PATH}; + shift 1 + args= + while [ $# -gt 0 ]; do + token=`echo "$1" | sed 's/ /\\\\ /g'` # Add blackslash before each blank + args="${args} ${token}" + shift + done + "${exe_dir}"/initialstructure bWR +fi +exit diff --git a/sourcecodes/data/example_chl/bWRstructure_input.txt b/sourcecodes/data/example_chl/bWRstructure_input.txt new file mode 100644 index 00000000..efa98e06 --- /dev/null +++ b/sourcecodes/data/example_chl/bWRstructure_input.txt @@ -0,0 +1,7 @@ +Ctrq3 MAS Neutrophil Load Weight +0 1 1 1 1 +0 0 1 1 0 +0 0 0 0 1 +0 0 0 0 0 +0 0 0 0 0 + diff --git a/sourcecodes/data/example_chl/bWRstructure_old.txt b/sourcecodes/data/example_chl/bWRstructure_old.txt new file mode 100644 index 00000000..a6aed858 --- /dev/null +++ b/sourcecodes/data/example_chl/bWRstructure_old.txt @@ -0,0 +1,5 @@ +Ctrq3 0.6341 0.3659 +MAS 0.0292 0.0326 0.0362 0.0401 0.0443 0.0489 0.0539 0.0592 0.0648 0.0709 0.0774 0.0842 0.0915 0.0992 0.1072 0.1157 0.1246 0.1338 0.1434 0.1534 0.1636 0.1742 0.1850 0.1961 0.2074 0.2188 0.2303 0.2419 0.2535 0.2651 0.2766 0.2879 0.2991 0.3099 0.3205 0.3307 0.3404 0.3496 0.3583 0.3663 0.3737 0.3804 0.3864 0.3916 0.3959 0.3994 0.4021 0.4038 0.4047 0.4046 0.4037 0.4018 0.3991 0.3954 0.3910 0.3857 0.3797 0.3729 0.3654 0.3572 0.3485 0.3392 0.3294 0.3192 0.3086 0.2977 0.2865 0.2752 0.2637 0.2521 0.2405 0.2289 0.2173 0.2059 0.1947 0.1837 0.1729 0.1623 0.1521 0.1422 0.1326 0.1234 0.1146 0.1062 0.0982 0.0906 0.0834 0.0765 0.0701 0.0641 0.0585 0.0532 0.0483 0.0438 0.0396 0.0357 0.0321 0.0288 0.0258 0.0231 0.0206 +Neutrophil 0.0245 0.0277 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new file mode 100644 index 00000000..6ef2df09 --- /dev/null +++ b/sourcecodes/data/example_chl/bWRvarname.txt @@ -0,0 +1 @@ +Ctrq3 \ No newline at end of file -- cgit 1.4.1