GENENET8 update

19 files changed, 61 insertions, 7 deletions

diff --git a/sourcecodes/data/example_chl/bWRstructure_input.txt b/sourcecodes/data/example_chl/bWRstructure_input.txt
index efa98e06..1114285f 100644
--- a/sourcecodes/data/example_chl/bWRstructure_input.txt
+++ b/sourcecodes/data/example_chl/bWRstructure_input.txt
@@ -1,7 +1,6 @@
-Ctrq3	MAS	Neutrophil	Load	Weight
-0	1	1	1	1
-0	0	1	1	0
-0	0	0	0	1
-0	0	0	0	0
-0	0	0	0	0
-
+Ctrq3	MAS	Neutrophil	Load	Weight	
+0	1	1	1	1	
+0	0	1	1	0	
+0	0	0	0	1	
+0	0	0	0	0	
+0	0	0	0	0	
diff --git a/sourcecodes/data/example_chl/bWRstructure_input_temp.txt b/sourcecodes/data/example_chl/bWRstructure_input_temp.txt
new file mode 100644
index 00000000..dd28b6b9
--- /dev/null
+++ b/sourcecodes/data/example_chl/bWRstructure_input_temp.txt
@@ -0,0 +1,6 @@
+Ctrq3	MAS	Neutrophil	Load	Weight	
+0.000000	0.971631	0.988653	0.975655	0.808347	
+0.000000	0.000000	0.574946	0.600694	0.458029	
+0.000000	0.423826	0.000000	0.140335	0.962872	
+0.000000	0.399237	0.131467	0.000000	0.470194	
+0.000000	0.000000	0.000000	0.000000	0.000000	
diff --git a/sourcecodes/data/example_chl/bWRcontinuous_input.txt b/sourcecodes/data/example_chl/old_gn/bWRcontinuous_input.txt
index cf674ffd..cf674ffd 100644
--- a/sourcecodes/data/example_chl/bWRcontinuous_input.txt
+++ b/sourcecodes/data/example_chl/old_gn/bWRcontinuous_input.txt
diff --git a/sourcecodes/data/example_chl/old_gn/bWRcontinuous_input_orig.txt b/sourcecodes/data/example_chl/old_gn/bWRcontinuous_input_orig.txt
new file mode 100644
index 00000000..62705bb9
--- /dev/null
+++ b/sourcecodes/data/example_chl/old_gn/bWRcontinuous_input_orig.txt
@@ -0,0 +1,42 @@
+Ctrq3	MAS	Neutrophil	Load	Weight
+2	0.969230769	3	3.252367514	1
+2	0.925170068	1.6	2.46322088	1.033472803
+1	0.427272727	33.8	4.206610024	0.831372549
+2	0.877835951	8.3	3.764250875	0.967153285
+2	0.914862915	4.4	3.691700208	1.046025105
+2	0.560334528	4.9	2.604550033	0.98046875
+1	0.383073497	13.1	4.273556814	0.812316716
+1	0.101010101	18.6	5.089640217	0.771929825
+1	0.106719368	18.9	4.915125346	0.80994152
+2	0.894736842	2.5	2.691700208	0.995515695
+1	0.067226891	19.8	4.878194228	0.846153846
+2	0.921022067	2.9	4.127428778	1.03875969
+2	0.938701923	0.7	4.366310867	0.984732824
+1	0.658008658	15.7	4.531121115	0.884210526
+2	0.9	4.8	2.604550033	0.913194444
+2	0.790923825	10.4	2.390670213	0.892857143
+1	0.295539033	8.6	4.24137213	0.85840708
+2	0.317757009	12.2	4.449648073	0.889830508
+1	0.032418953	20.2	5.053428044	0.811320755
+1	0.603960396	23.4	4.283775979	0.805460751
+2	0.939351199	3.6	2.349277527	0.952380952
+1	0.978448276	0.4	3.495405563	0.8875
+1	0.1	23.2	4.675613388	0.766101695
+1	0.036363636	32.6	4.938109253	0.828125
+1	0.660247593	9.2	3.826398782	0.921052632
+1	0.078651685	35.8	4.513630383	0.852112676
+1	0.186915888	20.7	5.048247532	0.779761905
+1	0.071578947	35.6	4.574586809	0.797356828
+1	0.239520958	15.4	4.331548761	0.941176471
+1	0.205741627	24.5	5.058547488	0.774193548
+1	0.062300319	13.4	4.594790195	0.832236842
+2	0.599675851	5	4.18178644	0.969348659
+1	0.324246772	13.5	4.252367514	0.858585859
+1	0.87628866	14.2	2.929061124	0.869863014
+1	0.146103896	15.6	4.579726449	0.9
+1	0.257383966	22.5	5.210214148	0.75
+1	0.033333333	31.1	4.632578756	0.718644068
+1	0.29739777	36.1	3.880756445	0.798353909
+2	0.872979215	4.2	4.097465554	0.856756757
+2	0.909221902	4.3	3.650307523	0.976
+1	0.10041841	28.3	4.46322088	0.757462687
diff --git a/sourcecodes/data/example_chl/bWRgraphviz.txt b/sourcecodes/data/example_chl/old_gn/bWRgraphviz.txt
index 2cd4e8cd..2cd4e8cd 100644
--- a/sourcecodes/data/example_chl/bWRgraphviz.txt
+++ b/sourcecodes/data/example_chl/old_gn/bWRgraphviz.txt
diff --git a/sourcecodes/data/example_chl/bWRmap.txt b/sourcecodes/data/example_chl/old_gn/bWRmap.txt
index b24eae2f..b24eae2f 100644
--- a/sourcecodes/data/example_chl/bWRmap.txt
+++ b/sourcecodes/data/example_chl/old_gn/bWRmap.txt
diff --git a/sourcecodes/data/example_chl/bWRmapdata.txt b/sourcecodes/data/example_chl/old_gn/bWRmapdata.txt
index ce5416ce..ce5416ce 100644
--- a/sourcecodes/data/example_chl/bWRmapdata.txt
+++ b/sourcecodes/data/example_chl/old_gn/bWRmapdata.txt
diff --git a/sourcecodes/data/example_chl/bWRname.txt b/sourcecodes/data/example_chl/old_gn/bWRname.txt
index 48018335..48018335 100644
--- a/sourcecodes/data/example_chl/bWRname.txt
+++ b/sourcecodes/data/example_chl/old_gn/bWRname.txt
diff --git a/sourcecodes/data/example_chl/bWRnet_figure.txt b/sourcecodes/data/example_chl/old_gn/bWRnet_figure.txt
index 6a3a1dbc..6a3a1dbc 100644
--- a/sourcecodes/data/example_chl/bWRnet_figure.txt
+++ b/sourcecodes/data/example_chl/old_gn/bWRnet_figure.txt
diff --git a/sourcecodes/data/example_chl/bWRnet_figure_new.txt b/sourcecodes/data/example_chl/old_gn/bWRnet_figure_new.txt
index 9b493660..9b493660 100644
--- a/sourcecodes/data/example_chl/bWRnet_figure_new.txt
+++ b/sourcecodes/data/example_chl/old_gn/bWRnet_figure_new.txt
diff --git a/sourcecodes/data/example_chl/bWRnlevels.txt b/sourcecodes/data/example_chl/old_gn/bWRnlevels.txt
index 9f618060..9f618060 100644
--- a/sourcecodes/data/example_chl/bWRnlevels.txt
+++ b/sourcecodes/data/example_chl/old_gn/bWRnlevels.txt
diff --git a/sourcecodes/data/example_chl/bWRnnode.txt b/sourcecodes/data/example_chl/old_gn/bWRnnode.txt
index 7ed6ff82..7ed6ff82 100644
--- a/sourcecodes/data/example_chl/bWRnnode.txt
+++ b/sourcecodes/data/example_chl/old_gn/bWRnnode.txt
diff --git a/sourcecodes/data/example_chl/bWRparameters.txt b/sourcecodes/data/example_chl/old_gn/bWRparameters.txt
index 6d6eabf6..6d6eabf6 100644
--- a/sourcecodes/data/example_chl/bWRparameters.txt
+++ b/sourcecodes/data/example_chl/old_gn/bWRparameters.txt
diff --git a/sourcecodes/data/example_chl/old_gn/bWRstructure_input.txt b/sourcecodes/data/example_chl/old_gn/bWRstructure_input.txt
new file mode 100644
index 00000000..efa98e06
--- /dev/null
+++ b/sourcecodes/data/example_chl/old_gn/bWRstructure_input.txt
@@ -0,0 +1,7 @@
+Ctrq3	MAS	Neutrophil	Load	Weight
+0	1	1	1	1
+0	0	1	1	0
+0	0	0	0	1
+0	0	0	0	0
+0	0	0	0	0
+
diff --git a/sourcecodes/data/example_chl/bWRstructure_old.txt b/sourcecodes/data/example_chl/old_gn/bWRstructure_old.txt
index a6aed858..a6aed858 100644
--- a/sourcecodes/data/example_chl/bWRstructure_old.txt
+++ b/sourcecodes/data/example_chl/old_gn/bWRstructure_old.txt
diff --git a/sourcecodes/data/example_chl/bWRtype.txt b/sourcecodes/data/example_chl/old_gn/bWRtype.txt
index 03b402ee..03b402ee 100644
--- a/sourcecodes/data/example_chl/bWRtype.txt
+++ b/sourcecodes/data/example_chl/old_gn/bWRtype.txt
diff --git a/sourcecodes/data/example_chl/bWRvar.txt b/sourcecodes/data/example_chl/old_gn/bWRvar.txt
index 56a6051c..56a6051c 100644
--- a/sourcecodes/data/example_chl/bWRvar.txt
+++ b/sourcecodes/data/example_chl/old_gn/bWRvar.txt
diff --git a/sourcecodes/data/example_chl/bWRvardata.txt b/sourcecodes/data/example_chl/old_gn/bWRvardata.txt
index 56a6051c..56a6051c 100644
--- a/sourcecodes/data/example_chl/bWRvardata.txt
+++ b/sourcecodes/data/example_chl/old_gn/bWRvardata.txt
diff --git a/sourcecodes/data/example_chl/bWRvarname.txt b/sourcecodes/data/example_chl/old_gn/bWRvarname.txt
index 6ef2df09..6ef2df09 100644
--- a/sourcecodes/data/example_chl/bWRvarname.txt
+++ b/sourcecodes/data/example_chl/old_gn/bWRvarname.txt