From 25b843f6bbacb1937bdb960777b73acbece64115 Mon Sep 17 00:00:00 2001
From: ziejd2
Date: Wed, 24 Feb 2021 14:36:59 -0600
Subject: GENENET8 update

---
 .../data/example_chl/bWRcontinuous_input.txt       |  44 ---
 sourcecodes/data/example_chl/bWRgraphviz.txt       |  11 -
 sourcecodes/data/example_chl/bWRmap.txt            |   5 -
 sourcecodes/data/example_chl/bWRmapdata.txt        |   1 -
 sourcecodes/data/example_chl/bWRname.txt           |   1 -
 sourcecodes/data/example_chl/bWRnet_figure.txt     | 433 ---------------------
 sourcecodes/data/example_chl/bWRnet_figure_new.txt | 433 ---------------------
 sourcecodes/data/example_chl/bWRnlevels.txt        |   2 -
 sourcecodes/data/example_chl/bWRnnode.txt          |   1 -
 sourcecodes/data/example_chl/bWRparameters.txt     |  21 -
 .../data/example_chl/bWRstructure_input.txt        |  13 +-
 .../data/example_chl/bWRstructure_input_temp.txt   |   6 +
 sourcecodes/data/example_chl/bWRstructure_old.txt  |   5 -
 sourcecodes/data/example_chl/bWRtype.txt           |   2 -
 sourcecodes/data/example_chl/bWRvar.txt            |   1 -
 sourcecodes/data/example_chl/bWRvardata.txt        |   1 -
 sourcecodes/data/example_chl/bWRvarname.txt        |   1 -
 .../example_chl/old_gn/bWRcontinuous_input.txt     |  44 +++
 .../old_gn/bWRcontinuous_input_orig.txt            |  42 ++
 .../data/example_chl/old_gn/bWRgraphviz.txt        |  11 +
 sourcecodes/data/example_chl/old_gn/bWRmap.txt     |   5 +
 sourcecodes/data/example_chl/old_gn/bWRmapdata.txt |   1 +
 sourcecodes/data/example_chl/old_gn/bWRname.txt    |   1 +
 .../data/example_chl/old_gn/bWRnet_figure.txt      | 433 +++++++++++++++++++++
 .../data/example_chl/old_gn/bWRnet_figure_new.txt  | 433 +++++++++++++++++++++
 sourcecodes/data/example_chl/old_gn/bWRnlevels.txt |   2 +
 sourcecodes/data/example_chl/old_gn/bWRnnode.txt   |   1 +
 .../data/example_chl/old_gn/bWRparameters.txt      |  21 +
 .../data/example_chl/old_gn/bWRstructure_input.txt |   7 +
 .../data/example_chl/old_gn/bWRstructure_old.txt   |   5 +
 sourcecodes/data/example_chl/old_gn/bWRtype.txt    |   2 +
 sourcecodes/data/example_chl/old_gn/bWRvar.txt     |   1 +
 sourcecodes/data/example_chl/old_gn/bWRvardata.txt |   1 +
 sourcecodes/data/example_chl/old_gn/bWRvarname.txt |   1 +
 34 files changed, 1023 insertions(+), 969 deletions(-)
 delete mode 100644 sourcecodes/data/example_chl/bWRcontinuous_input.txt
 delete mode 100644 sourcecodes/data/example_chl/bWRgraphviz.txt
 delete mode 100644 sourcecodes/data/example_chl/bWRmap.txt
 delete mode 100644 sourcecodes/data/example_chl/bWRmapdata.txt
 delete mode 100644 sourcecodes/data/example_chl/bWRname.txt
 delete mode 100644 sourcecodes/data/example_chl/bWRnet_figure.txt
 delete mode 100644 sourcecodes/data/example_chl/bWRnet_figure_new.txt
 delete mode 100644 sourcecodes/data/example_chl/bWRnlevels.txt
 delete mode 100644 sourcecodes/data/example_chl/bWRnnode.txt
 delete mode 100644 sourcecodes/data/example_chl/bWRparameters.txt
 create mode 100644 sourcecodes/data/example_chl/bWRstructure_input_temp.txt
 delete mode 100644 sourcecodes/data/example_chl/bWRstructure_old.txt
 delete mode 100644 sourcecodes/data/example_chl/bWRtype.txt
 delete mode 100644 sourcecodes/data/example_chl/bWRvar.txt
 delete mode 100644 sourcecodes/data/example_chl/bWRvardata.txt
 delete mode 100644 sourcecodes/data/example_chl/bWRvarname.txt
 create mode 100644 sourcecodes/data/example_chl/old_gn/bWRcontinuous_input.txt
 create mode 100644 sourcecodes/data/example_chl/old_gn/bWRcontinuous_input_orig.txt
 create mode 100644 sourcecodes/data/example_chl/old_gn/bWRgraphviz.txt
 create mode 100644 sourcecodes/data/example_chl/old_gn/bWRmap.txt
 create mode 100644 sourcecodes/data/example_chl/old_gn/bWRmapdata.txt
 create mode 100644 sourcecodes/data/example_chl/old_gn/bWRname.txt
 create mode 100644 sourcecodes/data/example_chl/old_gn/bWRnet_figure.txt
 create mode 100644 sourcecodes/data/example_chl/old_gn/bWRnet_figure_new.txt
 create mode 100644 sourcecodes/data/example_chl/old_gn/bWRnlevels.txt
 create mode 100644 sourcecodes/data/example_chl/old_gn/bWRnnode.txt
 create mode 100644 sourcecodes/data/example_chl/old_gn/bWRparameters.txt
 create mode 100644 sourcecodes/data/example_chl/old_gn/bWRstructure_input.txt
 create mode 100644 sourcecodes/data/example_chl/old_gn/bWRstructure_old.txt
 create mode 100644 sourcecodes/data/example_chl/old_gn/bWRtype.txt
 create mode 100644 sourcecodes/data/example_chl/old_gn/bWRvar.txt
 create mode 100644 sourcecodes/data/example_chl/old_gn/bWRvardata.txt
 create mode 100644 sourcecodes/data/example_chl/old_gn/bWRvarname.txt

(limited to 'sourcecodes/data/example_chl')

diff --git a/sourcecodes/data/example_chl/bWRcontinuous_input.txt b/sourcecodes/data/example_chl/bWRcontinuous_input.txt
deleted file mode 100644
index cf674ffd..00000000
--- a/sourcecodes/data/example_chl/bWRcontinuous_input.txt
+++ /dev/null
@@ -1,44 +0,0 @@
-Ctrq3	MAS	Neutrophil	Load	Weight
-2	1	1	1	1
-2	0.969230769	3	3.252367514	1
-2	0.925170068	1.6	2.46322088	1.033472803
-1	0.427272727	33.8	4.206610024	0.831372549
-2	0.877835951	8.3	3.764250875	0.967153285
-2	0.914862915	4.4	3.691700208	1.046025105
-2	0.560334528	4.9	2.604550033	0.98046875
-1	0.383073497	13.1	4.273556814	0.812316716
-1	0.101010101	18.6	5.089640217	0.771929825
-1	0.106719368	18.9	4.915125346	0.80994152
-2	0.894736842	2.5	2.691700208	0.995515695
-1	0.067226891	19.8	4.878194228	0.846153846
-2	0.921022067	2.9	4.127428778	1.03875969
-2	0.938701923	0.7	4.366310867	0.984732824
-1	0.658008658	15.7	4.531121115	0.884210526
-2	0.9	4.8	2.604550033	0.913194444
-2	0.790923825	10.4	2.390670213	0.892857143
-1	0.295539033	8.6	4.24137213	0.85840708
-2	0.317757009	12.2	4.449648073	0.889830508
-1	0.032418953	20.2	5.053428044	0.811320755
-1	0.603960396	23.4	4.283775979	0.805460751
-2	0.939351199	3.6	2.349277527	0.952380952
-1	0.978448276	0.4	3.495405563	0.8875
-1	0.1	23.2	4.675613388	0.766101695
-1	0.036363636	32.6	4.938109253	0.828125
-1	0.660247593	9.2	3.826398782	0.921052632
-1	0.078651685	35.8	4.513630383	0.852112676
-1	0.186915888	20.7	5.048247532	0.779761905
-1	0.071578947	35.6	4.574586809	0.797356828
-1	0.239520958	15.4	4.331548761	0.941176471
-1	0.205741627	24.5	5.058547488	0.774193548
-1	0.062300319	13.4	4.594790195	0.832236842
-2	0.599675851	5	4.18178644	0.969348659
-1	0.324246772	13.5	4.252367514	0.858585859
-1	0.87628866	14.2	2.929061124	0.869863014
-1	0.146103896	15.6	4.579726449	0.9
-1	0.257383966	22.5	5.210214148	0.75
-1	0.033333333	31.1	4.632578756	0.718644068
-1	0.29739777	36.1	3.880756445	0.798353909
-2	0.872979215	4.2	4.097465554	0.856756757
-2	0.909221902	4.3	3.650307523	0.976
-1	0.10041841	28.3	4.46322088	0.757462687
-
diff --git a/sourcecodes/data/example_chl/bWRgraphviz.txt b/sourcecodes/data/example_chl/bWRgraphviz.txt
deleted file mode 100644
index 2cd4e8cd..00000000
--- a/sourcecodes/data/example_chl/bWRgraphviz.txt
+++ /dev/null
@@ -1,11 +0,0 @@
-digraph G {
-size="10,10";  ratio = fill;
-node [shape=square,width=1.5];
-Ctrq3 -> MAS;
-Ctrq3 -> Neutrophil;
-Ctrq3 -> Load;
-Ctrq3 -> Weight;
-MAS -> Neutrophil;
-MAS -> Load;
-Neutrophil -> Weight;
-}
\ No newline at end of file
diff --git a/sourcecodes/data/example_chl/bWRmap.txt b/sourcecodes/data/example_chl/bWRmap.txt
deleted file mode 100644
index b24eae2f..00000000
--- a/sourcecodes/data/example_chl/bWRmap.txt
+++ /dev/null
@@ -1,5 +0,0 @@
-Ctrq3	0.487652	1.365854
-MAS	0.355012	0.479560
-Neutrophil	10.929756	15.048780
-Load	0.825354	4.077143
-Weight	0.088036	0.877077
diff --git a/sourcecodes/data/example_chl/bWRmapdata.txt b/sourcecodes/data/example_chl/bWRmapdata.txt
deleted file mode 100644
index ce5416ce..00000000
--- a/sourcecodes/data/example_chl/bWRmapdata.txt
+++ /dev/null
@@ -1 +0,0 @@
-Ctrq3	MAS	Load	Neutrophil	Weight
diff --git a/sourcecodes/data/example_chl/bWRname.txt b/sourcecodes/data/example_chl/bWRname.txt
deleted file mode 100644
index 48018335..00000000
--- a/sourcecodes/data/example_chl/bWRname.txt
+++ /dev/null
@@ -1 +0,0 @@
-Ctrq3	MAS	Neutrophil	Load	Weight
diff --git a/sourcecodes/data/example_chl/bWRnet_figure.txt b/sourcecodes/data/example_chl/bWRnet_figure.txt
deleted file mode 100644
index 6a3a1dbc..00000000
--- a/sourcecodes/data/example_chl/bWRnet_figure.txt
+++ /dev/null
@@ -1,433 +0,0 @@
-5
-1200	1200	
-Ctrq3	200	0
-MAS	320	240
-Load	0	480
-Neutrophil	400	480
-Weight	320	720
-Ctrq3	2
-250	150
-0
-4	2	3	4	5
-1	0.6341
-2	0.3659
-MAS	1
-250	150
-1	1
-2	3	4
--0.3226	0.0292
--0.3060	0.0326
--0.2895	0.0362
--0.2729	0.0401
--0.2564	0.0443
--0.2398	0.0489
--0.2232	0.0539
--0.2067	0.0592
--0.1901	0.0648
--0.1735	0.0709
--0.1570	0.0774
--0.1404	0.0842
--0.1239	0.0915
--0.1073	0.0992
--0.0907	0.1072
--0.0742	0.1157
--0.0576	0.1246
--0.0411	0.1338
--0.0245	0.1434
--0.0079	0.1534
-0.0086	0.1636
-0.0252	0.1742
-0.0417	0.1850
-0.0583	0.1961
-0.0749	0.2074
-0.0914	0.2188
-0.1080	0.2303
-0.1245	0.2419
-0.1411	0.2535
-0.1577	0.2651
-0.1742	0.2766
-0.1908	0.2879
-0.2073	0.2991
-0.2239	0.3099
-0.2405	0.3205
-0.2570	0.3307
-0.2736	0.3404
-0.2901	0.3496
-0.3067	0.3583
-0.3233	0.3663
-0.3398	0.3737
-0.3564	0.3804
-0.3729	0.3864
-0.3895	0.3916
-0.4061	0.3959
-0.4226	0.3994
-0.4392	0.4021
-0.4558	0.4038
-0.4723	0.4047
-0.4889	0.4046
-0.5054	0.4037
-0.5220	0.4018
-0.5386	0.3991
-0.5551	0.3954
-0.5717	0.3910
-0.5882	0.3857
-0.6048	0.3797
-0.6214	0.3729
-0.6379	0.3654
-0.6545	0.3572
-0.6710	0.3485
-0.6876	0.3392
-0.7042	0.3294
-0.7207	0.3192
-0.7373	0.3086
-0.7538	0.2977
-0.7704	0.2865
-0.7870	0.2752
-0.8035	0.2637
-0.8201	0.2521
-0.8366	0.2405
-0.8532	0.2289
-0.8698	0.2173
-0.8863	0.2059
-0.9029	0.1947
-0.9194	0.1837
-0.9360	0.1729
-0.9526	0.1623
-0.9691	0.1521
-0.9857	0.1422
-1.0022	0.1326
-1.0188	0.1234
-1.0354	0.1146
-1.0519	0.1062
-1.0685	0.0982
-1.0851	0.0906
-1.1016	0.0834
-1.1182	0.0765
-1.1347	0.0701
-1.1513	0.0641
-1.1679	0.0585
-1.1844	0.0532
-1.2010	0.0483
-1.2175	0.0438
-1.2341	0.0396
-1.2507	0.0357
-1.2672	0.0321
-1.2838	0.0288
-1.3003	0.0258
-1.3169	0.0231
-1.3335	0.0206
-Load	1
-250	150
-2	1	2
-0
-1.5239	0.0030
-1.5690	0.0036
-1.6142	0.0043
-1.6593	0.0050
-1.7044	0.0059
-1.7495	0.0069
-1.7946	0.0081
-1.8397	0.0094
-1.8849	0.0110
-1.9300	0.0127
-1.9751	0.0147
-2.0202	0.0169
-2.0653	0.0194
-2.1104	0.0222
-2.1556	0.0253
-2.2007	0.0287
-2.2458	0.0326
-2.2909	0.0368
-2.3360	0.0415
-2.3811	0.0466
-2.4263	0.0522
-2.4714	0.0583
-2.5165	0.0649
-2.5616	0.0720
-2.6067	0.0797
-2.6518	0.0879
-2.6970	0.0966
-2.7421	0.1059
-2.7872	0.1158
-2.8323	0.1261
-2.8774	0.1370
-2.9225	0.1484
-2.9676	0.1602
-3.0128	0.1724
-3.0579	0.1850
-3.1030	0.1979
-3.1481	0.2111
-3.1932	0.2244
-3.2383	0.2379
-3.2835	0.2514
-3.3286	0.2649
-3.3737	0.2782
-3.4188	0.2914
-3.4639	0.3042
-3.5090	0.3166
-3.5542	0.3285
-3.5993	0.3398
-3.6444	0.3504
-3.6895	0.3603
-3.7346	0.3693
-3.7797	0.3774
-3.8249	0.3845
-3.8700	0.3905
-3.9151	0.3954
-3.9602	0.3992
-4.0053	0.4017
-4.0504	0.4031
-4.0956	0.4032
-4.1407	0.4021
-4.1858	0.3997
-4.2309	0.3962
-4.2760	0.3915
-4.3211	0.3857
-4.3663	0.3788
-4.4114	0.3709
-4.4565	0.3620
-4.5016	0.3523
-4.5467	0.3418
-4.5918	0.3306
-4.6370	0.3188
-4.6821	0.3065
-4.7272	0.2937
-4.7723	0.2807
-4.8174	0.2674
-4.8625	0.2539
-4.9077	0.2404
-4.9528	0.2269
-4.9979	0.2135
-5.0430	0.2003
-5.0881	0.1874
-5.1332	0.1747
-5.1784	0.1624
-5.2235	0.1505
-5.2686	0.1391
-5.3137	0.1281
-5.3588	0.1176
-5.4039	0.1077
-5.4491	0.0983
-5.4942	0.0894
-5.5393	0.0811
-5.5844	0.0734
-5.6295	0.0662
-5.6746	0.0595
-5.7198	0.0533
-5.7649	0.0476
-5.8100	0.0424
-5.8551	0.0377
-5.9002	0.0333
-5.9453	0.0294
-5.9905	0.0259
-6.0356	0.0227
-Neutrophil	1
-250	150
-2	1	2
-1	5
--10.5298	0.0245
--9.9542	0.0277
--9.3786	0.0313
--8.8030	0.0353
--8.2274	0.0396
--7.6518	0.0444
--7.0762	0.0496
--6.5006	0.0552
--5.9250	0.0613
--5.3494	0.0679
--4.7738	0.0750
--4.1982	0.0825
--3.6226	0.0906
--3.0470	0.0992
--2.4714	0.1083
--1.8958	0.1180
--1.3202	0.1281
--0.7446	0.1386
--0.1690	0.1496
-0.4066	0.1611
-0.9821	0.1729
-1.5577	0.1851
-2.1333	0.1975
-2.7089	0.2102
-3.2845	0.2231
-3.8601	0.2361
-4.4357	0.2491
-5.0113	0.2621
-5.5869	0.2750
-6.1625	0.2878
-6.7381	0.3002
-7.3137	0.3124
-7.8893	0.3240
-8.4649	0.3352
-9.0405	0.3458
-9.6161	0.3557
-10.1917	0.3648
-10.7673	0.3731
-11.3429	0.3806
-11.9185	0.3870
-12.4940	0.3925
-13.0696	0.3969
-13.6452	0.4002
-14.2208	0.4025
-14.7964	0.4035
-15.3720	0.4035
-15.9476	0.4022
-16.5232	0.3999
-17.0988	0.3964
-17.6744	0.3919
-18.2500	0.3863
-18.8256	0.3797
-19.4012	0.3722
-19.9768	0.3637
-20.5524	0.3545
-21.1280	0.3445
-21.7036	0.3339
-22.2792	0.3226
-22.8548	0.3109
-23.4304	0.2987
-24.0060	0.2862
-24.5815	0.2735
-25.1571	0.2605
-25.7327	0.2475
-26.3083	0.2345
-26.8839	0.2215
-27.4595	0.2086
-28.0351	0.1960
-28.6107	0.1835
-29.1863	0.1714
-29.7619	0.1597
-30.3375	0.1483
-30.9131	0.1373
-31.4887	0.1268
-32.0643	0.1167
-32.6399	0.1072
-33.2155	0.0981
-33.7911	0.0896
-34.3667	0.0816
-34.9423	0.0741
-35.5179	0.0670
-36.0934	0.0605
-36.6690	0.0545
-37.2446	0.0489
-37.8202	0.0438
-38.3958	0.0391
-38.9714	0.0348
-39.5470	0.0308
-40.1226	0.0273
-40.6982	0.0241
-41.2738	0.0212
-41.8494	0.0186
-42.4250	0.0163
-43.0006	0.0142
-43.5762	0.0123
-44.1518	0.0107
-44.7274	0.0093
-45.3030	0.0080
-45.8786	0.0069
-46.4542	0.0059
-47.0298	0.0050
-Weight	1
-250	150
-2	1	4
-0
-0.6306	0.0076
-0.6356	0.0089
-0.6407	0.0105
-0.6457	0.0122
-0.6507	0.0142
-0.6558	0.0164
-0.6608	0.0190
-0.6659	0.0218
-0.6709	0.0250
-0.6759	0.0286
-0.6810	0.0326
-0.6860	0.0370
-0.6910	0.0419
-0.6961	0.0473
-0.7011	0.0531
-0.7061	0.0596
-0.7112	0.0665
-0.7162	0.0741
-0.7212	0.0822
-0.7263	0.0909
-0.7313	0.1002
-0.7363	0.1101
-0.7414	0.1206
-0.7464	0.1316
-0.7514	0.1432
-0.7565	0.1553
-0.7615	0.1678
-0.7665	0.1808
-0.7716	0.1941
-0.7766	0.2076
-0.7816	0.2215
-0.7867	0.2354
-0.7917	0.2494
-0.7967	0.2633
-0.8018	0.2772
-0.8068	0.2907
-0.8119	0.3040
-0.8169	0.3168
-0.8219	0.3290
-0.8270	0.3406
-0.8320	0.3514
-0.8370	0.3614
-0.8421	0.3704
-0.8471	0.3784
-0.8521	0.3853
-0.8572	0.3910
-0.8622	0.3955
-0.8672	0.3988
-0.8723	0.4007
-0.8773	0.4013
-0.8823	0.4006
-0.8874	0.3985
-0.8924	0.3952
-0.8974	0.3906
-0.9025	0.3847
-0.9075	0.3778
-0.9125	0.3697
-0.9176	0.3605
-0.9226	0.3505
-0.9276	0.3396
-0.9327	0.3280
-0.9377	0.3157
-0.9427	0.3028
-0.9478	0.2896
-0.9528	0.2759
-0.9579	0.2621
-0.9629	0.2481
-0.9679	0.2342
-0.9730	0.2202
-0.9780	0.2064
-0.9830	0.1929
-0.9881	0.1796
-0.9931	0.1667
-0.9981	0.1542
-1.0032	0.1422
-1.0082	0.1306
-1.0132	0.1197
-1.0183	0.1092
-1.0233	0.0994
-1.0283	0.0901
-1.0334	0.0815
-1.0384	0.0734
-1.0434	0.0659
-1.0485	0.0590
-1.0535	0.0526
-1.0585	0.0468
-1.0636	0.0414
-1.0686	0.0366
-1.0736	0.0322
-1.0787	0.0283
-1.0837	0.0247
-1.0888	0.0215
-1.0938	0.0187
-1.0988	0.0162
-1.1039	0.0140
-1.1089	0.0120
-1.1139	0.0103
-1.1190	0.0088
-1.1240	0.0075
-1.1290	0.0064
-1.1341	0.0054
diff --git a/sourcecodes/data/example_chl/bWRnet_figure_new.txt b/sourcecodes/data/example_chl/bWRnet_figure_new.txt
deleted file mode 100644
index 9b493660..00000000
--- a/sourcecodes/data/example_chl/bWRnet_figure_new.txt
+++ /dev/null
@@ -1,433 +0,0 @@
-1	
-5
-1200	1200	
-Ctrq3	200	0
-MAS	320	240
-Load	0	480
-Neutrophil	400	480
-Weight	320	720
-Ctrq3	2
-250	150
-0
-4	2	3	4	5
-1.0000	1.0000
-MAS	1
-250	150
-1	1
-2	3	4
--2.2595	0.0066
--2.2129	0.0085
--2.1662	0.0109
--2.1196	0.0138
--2.0729	0.0174
--2.0263	0.0219
--1.9796	0.0272
--1.9330	0.0336
--1.8863	0.0412
--1.8397	0.0501
--1.7930	0.0606
--1.7464	0.0728
--1.6997	0.0868
--1.6531	0.1027
--1.6064	0.1208
--1.5598	0.1410
--1.5131	0.1635
--1.4665	0.1882
--1.4199	0.2151
--1.3732	0.2442
--1.3266	0.2752
--1.2799	0.3080
--1.2333	0.3423
--1.1866	0.3777
--1.1400	0.4139
--1.0933	0.4503
--1.0467	0.4866
--1.0000	0.5221
--0.9534	0.5562
--0.9067	0.5884
--0.8601	0.6182
--0.8134	0.6448
--0.7668	0.6679
--0.7201	0.6870
--0.6735	0.7017
--0.6268	0.7116
--0.5802	0.7167
--0.5335	0.7167
--0.4869	0.7117
--0.4402	0.7018
--0.3936	0.6871
--0.3470	0.6681
--0.3003	0.6450
--0.2537	0.6184
--0.2070	0.5887
--0.1604	0.5565
--0.1137	0.5223
--0.0671	0.4869
--0.0204	0.4506
-0.0262	0.4142
-0.0729	0.3780
-0.1195	0.3425
-0.1662	0.3082
-0.2128	0.2754
-0.2595	0.2444
-0.3061	0.2153
-0.3528	0.1884
-0.3994	0.1637
-0.4461	0.1412
-0.4927	0.1209
-0.5394	0.1029
-0.5860	0.0869
-0.6327	0.0729
-0.6793	0.0607
-0.7259	0.0502
-0.7726	0.0412
-0.8192	0.0336
-0.8659	0.0272
-0.9125	0.0219
-0.9592	0.0175
-1.0058	0.0139
-1.0525	0.0109
-1.0991	0.0085
-1.1458	0.0066
-1.1924	0.0051
-1.2391	0.0039
-1.2857	0.0030
-1.3324	0.0022
-1.3790	0.0017
-1.4257	0.0012
-1.4723	0.0009
-1.5190	0.0007
-1.5656	0.0005
-1.6123	0.0004
-1.6589	0.0003
-1.7056	0.0002
-1.7522	0.0001
-1.7989	0.0001
-1.8455	0.0001
-1.8921	0.0000
-1.9388	0.0000
-1.9854	0.0000
-2.0321	0.0000
-2.0787	0.0000
-2.1254	0.0000
-2.1720	0.0000
-2.2187	0.0000
-2.2653	0.0000
-2.3120	0.0000
-2.3586	0.0000
-2.4053	0.0000
-Load	1
-250	150
-2	1	2
-0
--3.0935	0.0000
--3.0388	0.0000
--2.9842	0.0000
--2.9295	0.0000
--2.8748	0.0000
--2.8202	0.0000
--2.7655	0.0000
--2.7108	0.0000
--2.6562	0.0000
--2.6015	0.0000
--2.5469	0.0000
--2.4922	0.0000
--2.4375	0.0000
--2.3829	0.0000
--2.3282	0.0000
--2.2735	0.0000
--2.2189	0.0000
--2.1642	0.0000
--2.1095	0.0000
--2.0549	0.0000
--2.0002	0.0000
--1.9456	0.0000
--1.8909	0.0000
--1.8362	0.0000
--1.7816	0.0000
--1.7269	0.0000
--1.6722	0.0000
--1.6176	0.0000
--1.5629	0.0000
--1.5083	0.0000
--1.4536	0.0000
--1.3989	0.0000
--1.3443	0.0000
--1.2896	0.0001
--1.2349	0.0001
--1.1803	0.0002
--1.1256	0.0004
--1.0709	0.0007
--1.0163	0.0011
--0.9616	0.0018
--0.9070	0.0029
--0.8523	0.0046
--0.7976	0.0070
--0.7430	0.0106
--0.6883	0.0157
--0.6336	0.0228
--0.5790	0.0326
--0.5243	0.0458
--0.4697	0.0631
--0.4150	0.0855
--0.3603	0.1138
--0.3057	0.1487
--0.2510	0.1910
--0.1963	0.2409
--0.1417	0.2985
--0.0870	0.3633
--0.0323	0.4344
-0.0223	0.5102
-0.0770	0.5887
-0.1316	0.6672
-0.1863	0.7428
-0.2410	0.8124
-0.2956	0.8728
-0.3503	0.9211
-0.4050	0.9548
-0.4596	0.9724
-0.5143	0.9727
-0.5689	0.9558
-0.6236	0.9226
-0.6783	0.8749
-0.7329	0.8149
-0.7876	0.7456
-0.8423	0.6702
-0.8969	0.5917
-0.9516	0.5132
-1.0063	0.4372
-1.0609	0.3659
-1.1156	0.3008
-1.1702	0.2430
-1.2249	0.1927
-1.2796	0.1502
-1.3342	0.1150
-1.3889	0.0865
-1.4436	0.0639
-1.4982	0.0463
-1.5529	0.0330
-1.6075	0.0231
-1.6622	0.0159
-1.7169	0.0107
-1.7715	0.0071
-1.8262	0.0047
-1.8809	0.0030
-1.9355	0.0019
-1.9902	0.0012
-2.0449	0.0007
-2.0995	0.0004
-2.1542	0.0002
-2.2088	0.0001
-2.2635	0.0001
-2.3182	0.0000
-2.3728	0.0000
-Neutrophil	1
-250	150
-2	1	2
-1	5
--2.3403	0.0002
--2.2876	0.0002
--2.2349	0.0003
--2.1823	0.0004
--2.1296	0.0005
--2.0770	0.0007
--2.0243	0.0009
--1.9716	0.0012
--1.9190	0.0015
--1.8663	0.0020
--1.8136	0.0025
--1.7610	0.0032
--1.7083	0.0040
--1.6556	0.0051
--1.6030	0.0063
--1.5503	0.0079
--1.4977	0.0097
--1.4450	0.0120
--1.3923	0.0146
--1.3397	0.0178
--1.2870	0.0215
--1.2343	0.0259
--1.1817	0.0310
--1.1290	0.0369
--1.0764	0.0437
--1.0237	0.0514
--0.9710	0.0602
--0.9184	0.0702
--0.8657	0.0813
--0.8130	0.0937
--0.7604	0.1074
--0.7077	0.1224
--0.6550	0.1388
--0.6024	0.1565
--0.5497	0.1755
--0.4971	0.1957
--0.4444	0.2171
--0.3917	0.2396
--0.3391	0.2629
--0.2864	0.2870
--0.2337	0.3116
--0.1811	0.3364
--0.1284	0.3613
--0.0758	0.3859
--0.0231	0.4099
-0.0296	0.4331
-0.0822	0.4552
-0.1349	0.4757
-0.1876	0.4946
-0.2402	0.5113
-0.2929	0.5258
-0.3456	0.5378
-0.3982	0.5471
-0.4509	0.5535
-0.5035	0.5570
-0.5562	0.5575
-0.6089	0.5549
-0.6615	0.5494
-0.7142	0.5410
-0.7669	0.5299
-0.8195	0.5162
-0.8722	0.5001
-0.9248	0.4819
-0.9775	0.4618
-1.0302	0.4402
-1.0828	0.4173
-1.1355	0.3935
-1.1882	0.3691
-1.2408	0.3443
-1.2935	0.3194
-1.3462	0.2947
-1.3988	0.2704
-1.4515	0.2469
-1.5041	0.2241
-1.5568	0.2023
-1.6095	0.1817
-1.6621	0.1623
-1.7148	0.1442
-1.7675	0.1274
-1.8201	0.1120
-1.8728	0.0979
-1.9254	0.0851
-1.9781	0.0736
-2.0308	0.0632
-2.0834	0.0541
-2.1361	0.0460
-2.1888	0.0389
-2.2414	0.0328
-2.2941	0.0274
-2.3468	0.0228
-2.3994	0.0189
-2.4521	0.0156
-2.5047	0.0127
-2.5574	0.0104
-2.6101	0.0084
-2.6627	0.0068
-2.7154	0.0054
-2.7681	0.0043
-2.8207	0.0034
-2.8734	0.0027
-2.9260	0.0021
-Weight	1
-250	150
-2	1	4
-0
--2.7996	0.0000
--2.7425	0.0000
--2.6853	0.0000
--2.6281	0.0000
--2.5709	0.0000
--2.5137	0.0000
--2.4565	0.0000
--2.3993	0.0000
--2.3421	0.0000
--2.2850	0.0001
--2.2278	0.0001
--2.1706	0.0003
--2.1134	0.0005
--2.0562	0.0008
--1.9990	0.0014
--1.9418	0.0024
--1.8846	0.0040
--1.8275	0.0064
--1.7703	0.0101
--1.7131	0.0156
--1.6559	0.0236
--1.5987	0.0350
--1.5415	0.0507
--1.4843	0.0718
--1.4271	0.0996
--1.3700	0.1353
--1.3128	0.1797
--1.2556	0.2338
--1.1984	0.2976
--1.1412	0.3707
--1.0840	0.4520
--1.0268	0.5393
--0.9696	0.6299
--0.9125	0.7200
--0.8553	0.8055
--0.7981	0.8819
--0.7409	0.9451
--0.6837	0.9913
--0.6265	1.0175
--0.5693	1.0223
--0.5121	1.0052
--0.4550	0.9673
--0.3978	0.9111
--0.3406	0.8399
--0.2834	0.7577
--0.2262	0.6691
--0.1690	0.5782
--0.1118	0.4891
--0.0546	0.4049
-0.0025	0.3280
-0.0597	0.2601
-0.1169	0.2019
-0.1741	0.1533
-0.2313	0.1140
-0.2885	0.0829
-0.3457	0.0591
-0.4029	0.0412
-0.4600	0.0281
-0.5172	0.0187
-0.5744	0.0122
-0.6316	0.0078
-0.6888	0.0049
-0.7460	0.0030
-0.8032	0.0018
-0.8603	0.0011
-0.9175	0.0006
-0.9747	0.0003
-1.0319	0.0002
-1.0891	0.0001
-1.1463	0.0001
-1.2035	0.0000
-1.2607	0.0000
-1.3178	0.0000
-1.3750	0.0000
-1.4322	0.0000
-1.4894	0.0000
-1.5466	0.0000
-1.6038	0.0000
-1.6610	0.0000
-1.7182	0.0000
-1.7753	0.0000
-1.8325	0.0000
-1.8897	0.0000
-1.9469	0.0000
-2.0041	0.0000
-2.0613	0.0000
-2.1185	0.0000
-2.1757	0.0000
-2.2328	0.0000
-2.2900	0.0000
-2.3472	0.0000
-2.4044	0.0000
-2.4616	0.0000
-2.5188	0.0000
-2.5760	0.0000
-2.6332	0.0000
-2.6903	0.0000
-2.7475	0.0000
-2.8047	0.0000
-2.8619	0.0000
-2.9191	0.0000
diff --git a/sourcecodes/data/example_chl/bWRnlevels.txt b/sourcecodes/data/example_chl/bWRnlevels.txt
deleted file mode 100644
index 9f618060..00000000
--- a/sourcecodes/data/example_chl/bWRnlevels.txt
+++ /dev/null
@@ -1,2 +0,0 @@
-Ctrq3	1	2
-
diff --git a/sourcecodes/data/example_chl/bWRnnode.txt b/sourcecodes/data/example_chl/bWRnnode.txt
deleted file mode 100644
index 7ed6ff82..00000000
--- a/sourcecodes/data/example_chl/bWRnnode.txt
+++ /dev/null
@@ -1 +0,0 @@
-5
diff --git a/sourcecodes/data/example_chl/bWRparameters.txt b/sourcecodes/data/example_chl/bWRparameters.txt
deleted file mode 100644
index 6d6eabf6..00000000
--- a/sourcecodes/data/example_chl/bWRparameters.txt
+++ /dev/null
@@ -1,21 +0,0 @@
-Ctrq3
-Discrete node with 2 states
-1	0.6341
-2	0.3659
-
-MAS
-Continuous node
-0.4796	0.3499
-
-Neutrophil
-Continuous node
-15.0488	10.8026
-
-Load
-Continuous node
-4.0771	0.8165
-
-Weight
-Continuous node
-0.8771	0.0875
-
diff --git a/sourcecodes/data/example_chl/bWRstructure_input.txt b/sourcecodes/data/example_chl/bWRstructure_input.txt
index efa98e06..1114285f 100644
--- a/sourcecodes/data/example_chl/bWRstructure_input.txt
+++ b/sourcecodes/data/example_chl/bWRstructure_input.txt
@@ -1,7 +1,6 @@
-Ctrq3	MAS	Neutrophil	Load	Weight
-0	1	1	1	1
-0	0	1	1	0
-0	0	0	0	1
-0	0	0	0	0
-0	0	0	0	0
-
+Ctrq3	MAS	Neutrophil	Load	Weight	
+0	1	1	1	1	
+0	0	1	1	0	
+0	0	0	0	1	
+0	0	0	0	0	
+0	0	0	0	0	
diff --git a/sourcecodes/data/example_chl/bWRstructure_input_temp.txt b/sourcecodes/data/example_chl/bWRstructure_input_temp.txt
new file mode 100644
index 00000000..dd28b6b9
--- /dev/null
+++ b/sourcecodes/data/example_chl/bWRstructure_input_temp.txt
@@ -0,0 +1,6 @@
+Ctrq3	MAS	Neutrophil	Load	Weight	
+0.000000	0.971631	0.988653	0.975655	0.808347	
+0.000000	0.000000	0.574946	0.600694	0.458029	
+0.000000	0.423826	0.000000	0.140335	0.962872	
+0.000000	0.399237	0.131467	0.000000	0.470194	
+0.000000	0.000000	0.000000	0.000000	0.000000	
diff --git a/sourcecodes/data/example_chl/bWRstructure_old.txt b/sourcecodes/data/example_chl/bWRstructure_old.txt
deleted file mode 100644
index a6aed858..00000000
--- a/sourcecodes/data/example_chl/bWRstructure_old.txt
+++ /dev/null
@@ -1,5 +0,0 @@
-Ctrq3	0.6341	0.3659
-MAS	0.0292	0.0326	0.0362	0.0401	0.0443	0.0489	0.0539	0.0592	0.0648	0.0709	0.0774	0.0842	0.0915	0.0992	0.1072	0.1157	0.1246	0.1338	0.1434	0.1534	0.1636	0.1742	0.1850	0.1961	0.2074	0.2188	0.2303	0.2419	0.2535	0.2651	0.2766	0.2879	0.2991	0.3099	0.3205	0.3307	0.3404	0.3496	0.3583	0.3663	0.3737	0.3804	0.3864	0.3916	0.3959	0.3994	0.4021	0.4038	0.4047	0.4046	0.4037	0.4018	0.3991	0.3954	0.3910	0.3857	0.3797	0.3729	0.3654	0.3572	0.3485	0.3392	0.3294	0.3192	0.3086	0.2977	0.2865	0.2752	0.2637	0.2521	0.2405	0.2289	0.2173	0.2059	0.1947	0.1837	0.1729	0.1623	0.1521	0.1422	0.1326	0.1234	0.1146	0.1062	0.0982	0.0906	0.0834	0.0765	0.0701	0.0641	0.0585	0.0532	0.0483	0.0438	0.0396	0.0357	0.0321	0.0288	0.0258	0.0231	0.0206
-Neutrophil	0.0245	0.0277	0.0313	0.0353	0.0396	0.0444	0.0496	0.0552	0.0613	0.0679	0.0750	0.0825	0.0906	0.0992	0.1083	0.1180	0.1281	0.1386	0.1496	0.1611	0.1729	0.1851	0.1975	0.2102	0.2231	0.2361	0.2491	0.2621	0.2750	0.2878	0.3002	0.3124	0.3240	0.3352	0.3458	0.3557	0.3648	0.3731	0.3806	0.3870	0.3925	0.3969	0.4002	0.4025	0.4035	0.4035	0.4022	0.3999	0.3964	0.3919	0.3863	0.3797	0.3722	0.3637	0.3545	0.3445	0.3339	0.3226	0.3109	0.2987	0.2862	0.2735	0.2605	0.2475	0.2345	0.2215	0.2086	0.1960	0.1835	0.1714	0.1597	0.1483	0.1373	0.1268	0.1167	0.1072	0.0981	0.0896	0.0816	0.0741	0.0670	0.0605	0.0545	0.0489	0.0438	0.0391	0.0348	0.0308	0.0273	0.0241	0.0212	0.0186	0.0163	0.0142	0.0123	0.0107	0.0093	0.0080	0.0069	0.0059	0.0050
-Load	0.0030	0.0036	0.0043	0.0050	0.0059	0.0069	0.0081	0.0094	0.0110	0.0127	0.0147	0.0169	0.0194	0.0222	0.0253	0.0287	0.0326	0.0368	0.0415	0.0466	0.0522	0.0583	0.0649	0.0720	0.0797	0.0879	0.0966	0.1059	0.1158	0.1261	0.1370	0.1484	0.1602	0.1724	0.1850	0.1979	0.2111	0.2244	0.2379	0.2514	0.2649	0.2782	0.2914	0.3042	0.3166	0.3285	0.3398	0.3504	0.3603	0.3693	0.3774	0.3845	0.3905	0.3954	0.3992	0.4017	0.4031	0.4032	0.4021	0.3997	0.3962	0.3915	0.3857	0.3788	0.3709	0.3620	0.3523	0.3418	0.3306	0.3188	0.3065	0.2937	0.2807	0.2674	0.2539	0.2404	0.2269	0.2135	0.2003	0.1874	0.1747	0.1624	0.1505	0.1391	0.1281	0.1176	0.1077	0.0983	0.0894	0.0811	0.0734	0.0662	0.0595	0.0533	0.0476	0.0424	0.0377	0.0333	0.0294	0.0259	0.0227
-Weight	0.0076	0.0089	0.0105	0.0122	0.0142	0.0164	0.0190	0.0218	0.0250	0.0286	0.0326	0.0370	0.0419	0.0473	0.0531	0.0596	0.0665	0.0741	0.0822	0.0909	0.1002	0.1101	0.1206	0.1316	0.1432	0.1553	0.1678	0.1808	0.1941	0.2076	0.2215	0.2354	0.2494	0.2633	0.2772	0.2907	0.3040	0.3168	0.3290	0.3406	0.3514	0.3614	0.3704	0.3784	0.3853	0.3910	0.3955	0.3988	0.4007	0.4013	0.4006	0.3985	0.3952	0.3906	0.3847	0.3778	0.3697	0.3605	0.3505	0.3396	0.3280	0.3157	0.3028	0.2896	0.2759	0.2621	0.2481	0.2342	0.2202	0.2064	0.1929	0.1796	0.1667	0.1542	0.1422	0.1306	0.1197	0.1092	0.0994	0.0901	0.0815	0.0734	0.0659	0.0590	0.0526	0.0468	0.0414	0.0366	0.0322	0.0283	0.0247	0.0215	0.0187	0.0162	0.0140	0.0120	0.0103	0.0088	0.0075	0.0064	0.0054
diff --git a/sourcecodes/data/example_chl/bWRtype.txt b/sourcecodes/data/example_chl/bWRtype.txt
deleted file mode 100644
index 03b402ee..00000000
--- a/sourcecodes/data/example_chl/bWRtype.txt
+++ /dev/null
@@ -1,2 +0,0 @@
-Ctrq3	MAS	Neutrophil	Load	Weight
-2	1	1	1	1	
diff --git a/sourcecodes/data/example_chl/bWRvar.txt b/sourcecodes/data/example_chl/bWRvar.txt
deleted file mode 100644
index 56a6051c..00000000
--- a/sourcecodes/data/example_chl/bWRvar.txt
+++ /dev/null
@@ -1 +0,0 @@
-1
\ No newline at end of file
diff --git a/sourcecodes/data/example_chl/bWRvardata.txt b/sourcecodes/data/example_chl/bWRvardata.txt
deleted file mode 100644
index 56a6051c..00000000
--- a/sourcecodes/data/example_chl/bWRvardata.txt
+++ /dev/null
@@ -1 +0,0 @@
-1
\ No newline at end of file
diff --git a/sourcecodes/data/example_chl/bWRvarname.txt b/sourcecodes/data/example_chl/bWRvarname.txt
deleted file mode 100644
index 6ef2df09..00000000
--- a/sourcecodes/data/example_chl/bWRvarname.txt
+++ /dev/null
@@ -1 +0,0 @@
-Ctrq3
\ No newline at end of file
diff --git a/sourcecodes/data/example_chl/old_gn/bWRcontinuous_input.txt b/sourcecodes/data/example_chl/old_gn/bWRcontinuous_input.txt
new file mode 100644
index 00000000..cf674ffd
--- /dev/null
+++ b/sourcecodes/data/example_chl/old_gn/bWRcontinuous_input.txt
@@ -0,0 +1,44 @@
+Ctrq3	MAS	Neutrophil	Load	Weight
+2	1	1	1	1
+2	0.969230769	3	3.252367514	1
+2	0.925170068	1.6	2.46322088	1.033472803
+1	0.427272727	33.8	4.206610024	0.831372549
+2	0.877835951	8.3	3.764250875	0.967153285
+2	0.914862915	4.4	3.691700208	1.046025105
+2	0.560334528	4.9	2.604550033	0.98046875
+1	0.383073497	13.1	4.273556814	0.812316716
+1	0.101010101	18.6	5.089640217	0.771929825
+1	0.106719368	18.9	4.915125346	0.80994152
+2	0.894736842	2.5	2.691700208	0.995515695
+1	0.067226891	19.8	4.878194228	0.846153846
+2	0.921022067	2.9	4.127428778	1.03875969
+2	0.938701923	0.7	4.366310867	0.984732824
+1	0.658008658	15.7	4.531121115	0.884210526
+2	0.9	4.8	2.604550033	0.913194444
+2	0.790923825	10.4	2.390670213	0.892857143
+1	0.295539033	8.6	4.24137213	0.85840708
+2	0.317757009	12.2	4.449648073	0.889830508
+1	0.032418953	20.2	5.053428044	0.811320755
+1	0.603960396	23.4	4.283775979	0.805460751
+2	0.939351199	3.6	2.349277527	0.952380952
+1	0.978448276	0.4	3.495405563	0.8875
+1	0.1	23.2	4.675613388	0.766101695
+1	0.036363636	32.6	4.938109253	0.828125
+1	0.660247593	9.2	3.826398782	0.921052632
+1	0.078651685	35.8	4.513630383	0.852112676
+1	0.186915888	20.7	5.048247532	0.779761905
+1	0.071578947	35.6	4.574586809	0.797356828
+1	0.239520958	15.4	4.331548761	0.941176471
+1	0.205741627	24.5	5.058547488	0.774193548
+1	0.062300319	13.4	4.594790195	0.832236842
+2	0.599675851	5	4.18178644	0.969348659
+1	0.324246772	13.5	4.252367514	0.858585859
+1	0.87628866	14.2	2.929061124	0.869863014
+1	0.146103896	15.6	4.579726449	0.9
+1	0.257383966	22.5	5.210214148	0.75
+1	0.033333333	31.1	4.632578756	0.718644068
+1	0.29739777	36.1	3.880756445	0.798353909
+2	0.872979215	4.2	4.097465554	0.856756757
+2	0.909221902	4.3	3.650307523	0.976
+1	0.10041841	28.3	4.46322088	0.757462687
+
diff --git a/sourcecodes/data/example_chl/old_gn/bWRcontinuous_input_orig.txt b/sourcecodes/data/example_chl/old_gn/bWRcontinuous_input_orig.txt
new file mode 100644
index 00000000..62705bb9
--- /dev/null
+++ b/sourcecodes/data/example_chl/old_gn/bWRcontinuous_input_orig.txt
@@ -0,0 +1,42 @@
+Ctrq3	MAS	Neutrophil	Load	Weight
+2	0.969230769	3	3.252367514	1
+2	0.925170068	1.6	2.46322088	1.033472803
+1	0.427272727	33.8	4.206610024	0.831372549
+2	0.877835951	8.3	3.764250875	0.967153285
+2	0.914862915	4.4	3.691700208	1.046025105
+2	0.560334528	4.9	2.604550033	0.98046875
+1	0.383073497	13.1	4.273556814	0.812316716
+1	0.101010101	18.6	5.089640217	0.771929825
+1	0.106719368	18.9	4.915125346	0.80994152
+2	0.894736842	2.5	2.691700208	0.995515695
+1	0.067226891	19.8	4.878194228	0.846153846
+2	0.921022067	2.9	4.127428778	1.03875969
+2	0.938701923	0.7	4.366310867	0.984732824
+1	0.658008658	15.7	4.531121115	0.884210526
+2	0.9	4.8	2.604550033	0.913194444
+2	0.790923825	10.4	2.390670213	0.892857143
+1	0.295539033	8.6	4.24137213	0.85840708
+2	0.317757009	12.2	4.449648073	0.889830508
+1	0.032418953	20.2	5.053428044	0.811320755
+1	0.603960396	23.4	4.283775979	0.805460751
+2	0.939351199	3.6	2.349277527	0.952380952
+1	0.978448276	0.4	3.495405563	0.8875
+1	0.1	23.2	4.675613388	0.766101695
+1	0.036363636	32.6	4.938109253	0.828125
+1	0.660247593	9.2	3.826398782	0.921052632
+1	0.078651685	35.8	4.513630383	0.852112676
+1	0.186915888	20.7	5.048247532	0.779761905
+1	0.071578947	35.6	4.574586809	0.797356828
+1	0.239520958	15.4	4.331548761	0.941176471
+1	0.205741627	24.5	5.058547488	0.774193548
+1	0.062300319	13.4	4.594790195	0.832236842
+2	0.599675851	5	4.18178644	0.969348659
+1	0.324246772	13.5	4.252367514	0.858585859
+1	0.87628866	14.2	2.929061124	0.869863014
+1	0.146103896	15.6	4.579726449	0.9
+1	0.257383966	22.5	5.210214148	0.75
+1	0.033333333	31.1	4.632578756	0.718644068
+1	0.29739777	36.1	3.880756445	0.798353909
+2	0.872979215	4.2	4.097465554	0.856756757
+2	0.909221902	4.3	3.650307523	0.976
+1	0.10041841	28.3	4.46322088	0.757462687
diff --git a/sourcecodes/data/example_chl/old_gn/bWRgraphviz.txt b/sourcecodes/data/example_chl/old_gn/bWRgraphviz.txt
new file mode 100644
index 00000000..2cd4e8cd
--- /dev/null
+++ b/sourcecodes/data/example_chl/old_gn/bWRgraphviz.txt
@@ -0,0 +1,11 @@
+digraph G {
+size="10,10";  ratio = fill;
+node [shape=square,width=1.5];
+Ctrq3 -> MAS;
+Ctrq3 -> Neutrophil;
+Ctrq3 -> Load;
+Ctrq3 -> Weight;
+MAS -> Neutrophil;
+MAS -> Load;
+Neutrophil -> Weight;
+}
\ No newline at end of file
diff --git a/sourcecodes/data/example_chl/old_gn/bWRmap.txt b/sourcecodes/data/example_chl/old_gn/bWRmap.txt
new file mode 100644
index 00000000..b24eae2f
--- /dev/null
+++ b/sourcecodes/data/example_chl/old_gn/bWRmap.txt
@@ -0,0 +1,5 @@
+Ctrq3	0.487652	1.365854
+MAS	0.355012	0.479560
+Neutrophil	10.929756	15.048780
+Load	0.825354	4.077143
+Weight	0.088036	0.877077
diff --git a/sourcecodes/data/example_chl/old_gn/bWRmapdata.txt b/sourcecodes/data/example_chl/old_gn/bWRmapdata.txt
new file mode 100644
index 00000000..ce5416ce
--- /dev/null
+++ b/sourcecodes/data/example_chl/old_gn/bWRmapdata.txt
@@ -0,0 +1 @@
+Ctrq3	MAS	Load	Neutrophil	Weight
diff --git a/sourcecodes/data/example_chl/old_gn/bWRname.txt b/sourcecodes/data/example_chl/old_gn/bWRname.txt
new file mode 100644
index 00000000..48018335
--- /dev/null
+++ b/sourcecodes/data/example_chl/old_gn/bWRname.txt
@@ -0,0 +1 @@
+Ctrq3	MAS	Neutrophil	Load	Weight
diff --git a/sourcecodes/data/example_chl/old_gn/bWRnet_figure.txt b/sourcecodes/data/example_chl/old_gn/bWRnet_figure.txt
new file mode 100644
index 00000000..6a3a1dbc
--- /dev/null
+++ b/sourcecodes/data/example_chl/old_gn/bWRnet_figure.txt
@@ -0,0 +1,433 @@
+5
+1200	1200	
+Ctrq3	200	0
+MAS	320	240
+Load	0	480
+Neutrophil	400	480
+Weight	320	720
+Ctrq3	2
+250	150
+0
+4	2	3	4	5
+1	0.6341
+2	0.3659
+MAS	1
+250	150
+1	1
+2	3	4
+-0.3226	0.0292
+-0.3060	0.0326
+-0.2895	0.0362
+-0.2729	0.0401
+-0.2564	0.0443
+-0.2398	0.0489
+-0.2232	0.0539
+-0.2067	0.0592
+-0.1901	0.0648
+-0.1735	0.0709
+-0.1570	0.0774
+-0.1404	0.0842
+-0.1239	0.0915
+-0.1073	0.0992
+-0.0907	0.1072
+-0.0742	0.1157
+-0.0576	0.1246
+-0.0411	0.1338
+-0.0245	0.1434
+-0.0079	0.1534
+0.0086	0.1636
+0.0252	0.1742
+0.0417	0.1850
+0.0583	0.1961
+0.0749	0.2074
+0.0914	0.2188
+0.1080	0.2303
+0.1245	0.2419
+0.1411	0.2535
+0.1577	0.2651
+0.1742	0.2766
+0.1908	0.2879
+0.2073	0.2991
+0.2239	0.3099
+0.2405	0.3205
+0.2570	0.3307
+0.2736	0.3404
+0.2901	0.3496
+0.3067	0.3583
+0.3233	0.3663
+0.3398	0.3737
+0.3564	0.3804
+0.3729	0.3864
+0.3895	0.3916
+0.4061	0.3959
+0.4226	0.3994
+0.4392	0.4021
+0.4558	0.4038
+0.4723	0.4047
+0.4889	0.4046
+0.5054	0.4037
+0.5220	0.4018
+0.5386	0.3991
+0.5551	0.3954
+0.5717	0.3910
+0.5882	0.3857
+0.6048	0.3797
+0.6214	0.3729
+0.6379	0.3654
+0.6545	0.3572
+0.6710	0.3485
+0.6876	0.3392
+0.7042	0.3294
+0.7207	0.3192
+0.7373	0.3086
+0.7538	0.2977
+0.7704	0.2865
+0.7870	0.2752
+0.8035	0.2637
+0.8201	0.2521
+0.8366	0.2405
+0.8532	0.2289
+0.8698	0.2173
+0.8863	0.2059
+0.9029	0.1947
+0.9194	0.1837
+0.9360	0.1729
+0.9526	0.1623
+0.9691	0.1521
+0.9857	0.1422
+1.0022	0.1326
+1.0188	0.1234
+1.0354	0.1146
+1.0519	0.1062
+1.0685	0.0982
+1.0851	0.0906
+1.1016	0.0834
+1.1182	0.0765
+1.1347	0.0701
+1.1513	0.0641
+1.1679	0.0585
+1.1844	0.0532
+1.2010	0.0483
+1.2175	0.0438
+1.2341	0.0396
+1.2507	0.0357
+1.2672	0.0321
+1.2838	0.0288
+1.3003	0.0258
+1.3169	0.0231
+1.3335	0.0206
+Load	1
+250	150
+2	1	2
+0
+1.5239	0.0030
+1.5690	0.0036
+1.6142	0.0043
+1.6593	0.0050
+1.7044	0.0059
+1.7495	0.0069
+1.7946	0.0081
+1.8397	0.0094
+1.8849	0.0110
+1.9300	0.0127
+1.9751	0.0147
+2.0202	0.0169
+2.0653	0.0194
+2.1104	0.0222
+2.1556	0.0253
+2.2007	0.0287
+2.2458	0.0326
+2.2909	0.0368
+2.3360	0.0415
+2.3811	0.0466
+2.4263	0.0522
+2.4714	0.0583
+2.5165	0.0649
+2.5616	0.0720
+2.6067	0.0797
+2.6518	0.0879
+2.6970	0.0966
+2.7421	0.1059
+2.7872	0.1158
+2.8323	0.1261
+2.8774	0.1370
+2.9225	0.1484
+2.9676	0.1602
+3.0128	0.1724
+3.0579	0.1850
+3.1030	0.1979
+3.1481	0.2111
+3.1932	0.2244
+3.2383	0.2379
+3.2835	0.2514
+3.3286	0.2649
+3.3737	0.2782
+3.4188	0.2914
+3.4639	0.3042
+3.5090	0.3166
+3.5542	0.3285
+3.5993	0.3398
+3.6444	0.3504
+3.6895	0.3603
+3.7346	0.3693
+3.7797	0.3774
+3.8249	0.3845
+3.8700	0.3905
+3.9151	0.3954
+3.9602	0.3992
+4.0053	0.4017
+4.0504	0.4031
+4.0956	0.4032
+4.1407	0.4021
+4.1858	0.3997
+4.2309	0.3962
+4.2760	0.3915
+4.3211	0.3857
+4.3663	0.3788
+4.4114	0.3709
+4.4565	0.3620
+4.5016	0.3523
+4.5467	0.3418
+4.5918	0.3306
+4.6370	0.3188
+4.6821	0.3065
+4.7272	0.2937
+4.7723	0.2807
+4.8174	0.2674
+4.8625	0.2539
+4.9077	0.2404
+4.9528	0.2269
+4.9979	0.2135
+5.0430	0.2003
+5.0881	0.1874
+5.1332	0.1747
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diff --git a/sourcecodes/data/example_chl/old_gn/bWRnet_figure_new.txt b/sourcecodes/data/example_chl/old_gn/bWRnet_figure_new.txt
new file mode 100644
index 00000000..9b493660
--- /dev/null
+++ b/sourcecodes/data/example_chl/old_gn/bWRnet_figure_new.txt
@@ -0,0 +1,433 @@
+1	
+5
+1200	1200	
+Ctrq3	200	0
+MAS	320	240
+Load	0	480
+Neutrophil	400	480
+Weight	320	720
+Ctrq3	2
+250	150
+0
+4	2	3	4	5
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diff --git a/sourcecodes/data/example_chl/old_gn/bWRnlevels.txt b/sourcecodes/data/example_chl/old_gn/bWRnlevels.txt
new file mode 100644
index 00000000..9f618060
--- /dev/null
+++ b/sourcecodes/data/example_chl/old_gn/bWRnlevels.txt
@@ -0,0 +1,2 @@
+Ctrq3	1	2
+
diff --git a/sourcecodes/data/example_chl/old_gn/bWRnnode.txt b/sourcecodes/data/example_chl/old_gn/bWRnnode.txt
new file mode 100644
index 00000000..7ed6ff82
--- /dev/null
+++ b/sourcecodes/data/example_chl/old_gn/bWRnnode.txt
@@ -0,0 +1 @@
+5
diff --git a/sourcecodes/data/example_chl/old_gn/bWRparameters.txt b/sourcecodes/data/example_chl/old_gn/bWRparameters.txt
new file mode 100644
index 00000000..6d6eabf6
--- /dev/null
+++ b/sourcecodes/data/example_chl/old_gn/bWRparameters.txt
@@ -0,0 +1,21 @@
+Ctrq3
+Discrete node with 2 states
+1	0.6341
+2	0.3659
+
+MAS
+Continuous node
+0.4796	0.3499
+
+Neutrophil
+Continuous node
+15.0488	10.8026
+
+Load
+Continuous node
+4.0771	0.8165
+
+Weight
+Continuous node
+0.8771	0.0875
+
diff --git a/sourcecodes/data/example_chl/old_gn/bWRstructure_input.txt b/sourcecodes/data/example_chl/old_gn/bWRstructure_input.txt
new file mode 100644
index 00000000..efa98e06
--- /dev/null
+++ b/sourcecodes/data/example_chl/old_gn/bWRstructure_input.txt
@@ -0,0 +1,7 @@
+Ctrq3	MAS	Neutrophil	Load	Weight
+0	1	1	1	1
+0	0	1	1	0
+0	0	0	0	1
+0	0	0	0	0
+0	0	0	0	0
+
diff --git a/sourcecodes/data/example_chl/old_gn/bWRstructure_old.txt b/sourcecodes/data/example_chl/old_gn/bWRstructure_old.txt
new file mode 100644
index 00000000..a6aed858
--- /dev/null
+++ b/sourcecodes/data/example_chl/old_gn/bWRstructure_old.txt
@@ -0,0 +1,5 @@
+Ctrq3	0.6341	0.3659
+MAS	0.0292	0.0326	0.0362	0.0401	0.0443	0.0489	0.0539	0.0592	0.0648	0.0709	0.0774	0.0842	0.0915	0.0992	0.1072	0.1157	0.1246	0.1338	0.1434	0.1534	0.1636	0.1742	0.1850	0.1961	0.2074	0.2188	0.2303	0.2419	0.2535	0.2651	0.2766	0.2879	0.2991	0.3099	0.3205	0.3307	0.3404	0.3496	0.3583	0.3663	0.3737	0.3804	0.3864	0.3916	0.3959	0.3994	0.4021	0.4038	0.4047	0.4046	0.4037	0.4018	0.3991	0.3954	0.3910	0.3857	0.3797	0.3729	0.3654	0.3572	0.3485	0.3392	0.3294	0.3192	0.3086	0.2977	0.2865	0.2752	0.2637	0.2521	0.2405	0.2289	0.2173	0.2059	0.1947	0.1837	0.1729	0.1623	0.1521	0.1422	0.1326	0.1234	0.1146	0.1062	0.0982	0.0906	0.0834	0.0765	0.0701	0.0641	0.0585	0.0532	0.0483	0.0438	0.0396	0.0357	0.0321	0.0288	0.0258	0.0231	0.0206
+Neutrophil	0.0245	0.0277	0.0313	0.0353	0.0396	0.0444	0.0496	0.0552	0.0613	0.0679	0.0750	0.0825	0.0906	0.0992	0.1083	0.1180	0.1281	0.1386	0.1496	0.1611	0.1729	0.1851	0.1975	0.2102	0.2231	0.2361	0.2491	0.2621	0.2750	0.2878	0.3002	0.3124	0.3240	0.3352	0.3458	0.3557	0.3648	0.3731	0.3806	0.3870	0.3925	0.3969	0.4002	0.4025	0.4035	0.4035	0.4022	0.3999	0.3964	0.3919	0.3863	0.3797	0.3722	0.3637	0.3545	0.3445	0.3339	0.3226	0.3109	0.2987	0.2862	0.2735	0.2605	0.2475	0.2345	0.2215	0.2086	0.1960	0.1835	0.1714	0.1597	0.1483	0.1373	0.1268	0.1167	0.1072	0.0981	0.0896	0.0816	0.0741	0.0670	0.0605	0.0545	0.0489	0.0438	0.0391	0.0348	0.0308	0.0273	0.0241	0.0212	0.0186	0.0163	0.0142	0.0123	0.0107	0.0093	0.0080	0.0069	0.0059	0.0050
+Load	0.0030	0.0036	0.0043	0.0050	0.0059	0.0069	0.0081	0.0094	0.0110	0.0127	0.0147	0.0169	0.0194	0.0222	0.0253	0.0287	0.0326	0.0368	0.0415	0.0466	0.0522	0.0583	0.0649	0.0720	0.0797	0.0879	0.0966	0.1059	0.1158	0.1261	0.1370	0.1484	0.1602	0.1724	0.1850	0.1979	0.2111	0.2244	0.2379	0.2514	0.2649	0.2782	0.2914	0.3042	0.3166	0.3285	0.3398	0.3504	0.3603	0.3693	0.3774	0.3845	0.3905	0.3954	0.3992	0.4017	0.4031	0.4032	0.4021	0.3997	0.3962	0.3915	0.3857	0.3788	0.3709	0.3620	0.3523	0.3418	0.3306	0.3188	0.3065	0.2937	0.2807	0.2674	0.2539	0.2404	0.2269	0.2135	0.2003	0.1874	0.1747	0.1624	0.1505	0.1391	0.1281	0.1176	0.1077	0.0983	0.0894	0.0811	0.0734	0.0662	0.0595	0.0533	0.0476	0.0424	0.0377	0.0333	0.0294	0.0259	0.0227
+Weight	0.0076	0.0089	0.0105	0.0122	0.0142	0.0164	0.0190	0.0218	0.0250	0.0286	0.0326	0.0370	0.0419	0.0473	0.0531	0.0596	0.0665	0.0741	0.0822	0.0909	0.1002	0.1101	0.1206	0.1316	0.1432	0.1553	0.1678	0.1808	0.1941	0.2076	0.2215	0.2354	0.2494	0.2633	0.2772	0.2907	0.3040	0.3168	0.3290	0.3406	0.3514	0.3614	0.3704	0.3784	0.3853	0.3910	0.3955	0.3988	0.4007	0.4013	0.4006	0.3985	0.3952	0.3906	0.3847	0.3778	0.3697	0.3605	0.3505	0.3396	0.3280	0.3157	0.3028	0.2896	0.2759	0.2621	0.2481	0.2342	0.2202	0.2064	0.1929	0.1796	0.1667	0.1542	0.1422	0.1306	0.1197	0.1092	0.0994	0.0901	0.0815	0.0734	0.0659	0.0590	0.0526	0.0468	0.0414	0.0366	0.0322	0.0283	0.0247	0.0215	0.0187	0.0162	0.0140	0.0120	0.0103	0.0088	0.0075	0.0064	0.0054
diff --git a/sourcecodes/data/example_chl/old_gn/bWRtype.txt b/sourcecodes/data/example_chl/old_gn/bWRtype.txt
new file mode 100644
index 00000000..03b402ee
--- /dev/null
+++ b/sourcecodes/data/example_chl/old_gn/bWRtype.txt
@@ -0,0 +1,2 @@
+Ctrq3	MAS	Neutrophil	Load	Weight
+2	1	1	1	1	
diff --git a/sourcecodes/data/example_chl/old_gn/bWRvar.txt b/sourcecodes/data/example_chl/old_gn/bWRvar.txt
new file mode 100644
index 00000000..56a6051c
--- /dev/null
+++ b/sourcecodes/data/example_chl/old_gn/bWRvar.txt
@@ -0,0 +1 @@
+1
\ No newline at end of file
diff --git a/sourcecodes/data/example_chl/old_gn/bWRvardata.txt b/sourcecodes/data/example_chl/old_gn/bWRvardata.txt
new file mode 100644
index 00000000..56a6051c
--- /dev/null
+++ b/sourcecodes/data/example_chl/old_gn/bWRvardata.txt
@@ -0,0 +1 @@
+1
\ No newline at end of file
diff --git a/sourcecodes/data/example_chl/old_gn/bWRvarname.txt b/sourcecodes/data/example_chl/old_gn/bWRvarname.txt
new file mode 100644
index 00000000..6ef2df09
--- /dev/null
+++ b/sourcecodes/data/example_chl/old_gn/bWRvarname.txt
@@ -0,0 +1 @@
+Ctrq3
\ No newline at end of file
-- 
cgit 1.4.1