Jan 28 2019 update

1 files changed, 191 insertions, 0 deletions

diff --git a/sourcecodes/bn_after_upload_gom.php b/sourcecodes/bn_after_upload_gom.php
new file mode 100644
index 00000000..d7435cfd
--- /dev/null
+++ b/sourcecodes/bn_after_upload_gom.php
@@ -0,0 +1,191 @@
+<?php
+  //Going to modify this so it just writes the uploaded data to a file.
+  //Standardization and determining other factors will be performed in
+  //  a Matlab/Octave script.
+
+include("header_new.inc");
+include("header_batchsearch.inc");
+include("runtime_check.php");
+include("input_validate.php");
+//$searchID="";
+$searchID="YES";
+$UploadValue="NO";
+$TextFile=$HTTP_POST_FILES["MyFile"]["name"];
+
+
+/////////////Generate a random key/////////////////////
+//$alphas=array();
+//$alphas = array_merge(range('A', 'Z'), range('a', 'z'));
+
+//$al1=rand(0,51);
+//$al2=rand(0,51);
+//$al3=rand(0,51);
+
+//$alpha="$alphas[$al1]"."$alphas[$al2]"."$alphas[$al3]";
+//$keyval=$alpha;
+
+
+//if($_POST["My_key"]!="")
+//  $keyval=$_POST["My_key"];
+//  $keyval=valid_keyval($keyval);
+
+//$sid=$keyval."continuous_input";
+//$dir="./data/";
+
+//$TextinFile=$dir.$sid."_orig.txt";
+
+
+if(isset($HTTP_POST_VARS["searchkey"]))
+{
+   $searchID=$HTTP_POST_VARS["searchkey"];
+
+}
+
+if($searchID=="")
+{
+?>
+
+<!-- Site navigation menu -->
+<ul class="navbar">
+  <li><a href="help.php#file_format" target="_blank">Data formatting guidelines</a> 
+  <li><a href="help.php" target="_blank">Help</a>
+  <li><a href="home.php">Home</a>
+</ul>
+<?php
+}
+
+
+if(isset($HTTP_POST_VARS["MyUpload"]))
+{
+   $UploadValue=$HTTP_POST_VARS["MyUpload"];
+   if ($UploadValue=="YES")
+   {
+        if($TextFile!="")
+        {
+	  //	  $TextFile = valid_input($TextFile);
+            $sta=move_uploaded_file($HTTP_POST_FILES['MyFile']['tmp_name'],$TextinFile);
+            if(!$sta)
+            {
+                 echo "<script type='text/javascript'> window.alert ('Sorry, error uploading $TextFile.')</script>";
+                 flush();
+                 exit();
+            }
+            else
+            {
+                $searchID=file_get_contents("$TextinFile");
+		//unlink($TextinFile);
+
+            }
+
+        }
+
+       else
+       {
+           echo "<script type='text/javascript'> window.alert ('Sorry, please select upload file.')</script>";
+       }
+   }
+}
+
+?>
+<div id="outernew">
+<h2><font color=#33339f>Upload data file for structure learning search</font></h2>
+<FORM name="key_search" enctype="multipart/form-data" ACTION="bn_file_load_gom.php" METHOD=POST>
+
+<table align="left" cellspacing="3" cellpadding="1" border="0"  width="60%">
+<tr>
+<td>
+<INPUT style="background-color:#FFFFFF;color:#0000FF" type="file" name="MyFile" size=45 > 
+<INPUT TYPE="submit" value="  Upload  " onclick="return Upload();">
+<INPUT TYPE="hidden" NAME="My_key" value=<?php print($keyval) ?> >
+<INPUT TYPE="hidden" name="MyUpload" value="NO"> 
+</td>
+</tr>
+<tr>
+<td align="left"><font color=#33339f><br>Content of uploaded data file:</font><br>
+          <textarea name="searchkey" rows="8" cols="100"><?PHP print($searchID)?> </textarea>
+</td>
+</tr>
+<tr>
+<td>
+<INPUT TYPE="submit" value="  Load example data of immune responses to infection with Chlamydia psittaci  " onclick="return demochl();">&nbsp&nbsp&nbsp
+<INPUT TYPE="hidden" NAME="My_key" value=<?php print($keyval) ?> >
+</td>
+</tr>
+<tr>
+<td>
+<INPUT TYPE="submit" value="  Load example data of a synthetic genetic network with 2 genotypes and 6 traits  " onclick="return demo8nodes();">&nbsp&nbsp&nbsp
+<INPUT TYPE="hidden" NAME="My_key" value=<?php print($keyval) ?> >
+</td>
+</tr>
+<tr>
+<td>
+<INPUT TYPE="submit" value="  Load example data of immune-related gene in the spleens of BXD mice  " onclick="return demospnl();">&nbsp&nbsp&nbsp
+<INPUT TYPE="hidden" NAME="My_key" value=<?php print($keyval) ?> >
+</td>
+</tr>
+<tr>
+<td>
+<INPUT TYPE="submit" value="  Load the ksl dataset from deal  " onclick="return demoksl();">&nbsp&nbsp&nbsp
+<INPUT TYPE="hidden" NAME="My_key" value=<?php print($keyval) ?> >
+</td>
+</tr>
+<tr>
+<td>
+<INPUT TYPE="submit" value="  Load the rat dataset from deal  " onclick="return demorat();">&nbsp&nbsp&nbsp
+<INPUT TYPE="hidden" NAME="My_key" value=<?php print($keyval) ?> >
+</td>
+</tr>
+</table>
+</FORM>
+</div>
+
+<?php
+
+if($searchID!="")
+{
+  //if ($UploadValue=="NO")
+  //{
+  //    $fpdata = fopen($dir.$keyval."continuous_input_orig.txt","w");
+  //    fwrite($fpdata,$searchID);
+  //}  
+  //$keyval = valid_keyval($keyval);
+  //shell_exec('./run_scripts/run_prep_input '.$keyval);
+  $keyval=valid_keyval($_GET["My_key"]);
+  $parent_number=4;
+  $k_number=1;
+  $runtime=exe_time($keyval,$parent_number,$k_number);
+?>
+<ul class="navbar2">
+  <li><a href="executionprogress.php?My_key=<?php print($keyval);?>">Perform Bayesian network modeling using default settings</a>
+  <li><a href="create_tiers_gom.php?My_key=<?php print($keyval);?>">Go to structure learning settings and the BNW structural constraint interface</a>  
+  <li><a href="remove_variables.php?My_key=<?php print($keyval);?>">Remove variables from data set</a>  
+  <li><a href="javascript:void(0);"
+NAME="InputCheck" title="InputCheck"
+    onClick=window.open("input_check.php?My_key=<?php print($keyval);?>","Rat//ting","width=950,height=270,0,status=0,");>View uploaded variables and data</a>
+</ul>
+<ul class="navbar">
+<li><a href="help.php" target="_blank">Help</a>
+<li><a href="home.php">Home</a>
+</ul>
+<div id="outernew">
+<p><h3><?php 
+print("Estimated run time for current dataset using default settings: $runtime seconds");
+?>
+<br><br><br><br></h3>
+</p>
+<br>
+<br>
+<br>
+<br>
+<br>
+<br>
+<br>
+</div>
+<?php
+}
+?>
+
+</body>
+</html>
+
+