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# INSTALL GEMMA: Genome-wide Efficient Mixed Model Association
## Check version
Simply run gemma once installed
gemma
and it should give you the version.
## GEMMA dependencies
GEMMA runs on Linux and MAC OSX and the runtime has the following
dependencies:
* C++ tool chain
* GNU Science library (GSL)
* blas
* [Eigen library](http://eigen.tuxfamily.org/dox/)
* zlib
## Install GEMMA
### Bioconda
(Note Bioconda install is a work in [progress](https://github.com/xiangzhou/GEMMA/issues/52)
Recent versions of GEMMA can be installed with
[BioConda](http://ddocent.com/bioconda/) without root permissions using the following
command
conda install gemma
### GNU Guix
The GNU Guix package manager can install recent versions of [GEMMA](https://www.gnu.org/software/guix/packages/g.html)
using the following command
guix package -i gemma
### Install from source
Install listed dependencies and run
make
if you get an Eigen error you may need to override the include
path. E.g. on GNU Guix with shared libs this may work
make EIGEN_INCLUDE_PATH=~/.guix-profile/include/eigen3 FORCE_DYNAMIC=1 WITH_OPENBLAS=1
to run GEMMA tests
make check
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