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2020-08-26PerformancePjotr Prins
2020-05-28Travis conflictPjotr Prins
2020-05-28Checking performancePjotr Prins
2020-05-28Test change on Guix buildsPjotr Prins
2020-05-28TravisPjotr Prins
2020-05-28This test fails on main build systemPjotr Prins
2020-05-28-aPjotr Prins
Fix test suite
2020-05-28Fix copiles on gcc 10. Main thing is not to mix BLAS includes fromPjotr Prins
OpenBLAS, GSL (and Eigen when used).
2020-05-22Fixes for gcc (GCC) 10.1.0Pjotr Prins
Started to remove eigenlib (again)
2018-12-10Added test data for #188Pjotr Prins
2018-09-28Preparing for releasePjotr Prins
2018-09-28Fixes regression #179Pjotr Prins
2018-09-27Tests: added correlated phenotype testPjotr Prins
2018-09-27Inlining GSL callsPjotr Prins
2018-09-26Adding test data for correlated phenotypes (thanks @HannahVMeyer)Pjotr Prins
2018-09-26Updated version and added performance statsPjotr Prins
2018-09-19Replace safeGetline with native versionPjotr Prins
2018-09-18ProfilingPjotr Prins
2018-09-18Performance metricsPjotr Prins
2018-09-15Using Guix container to build with gcc and clangPjotr Prins
2018-09-07Matrices positive definite issuesPjotr Prins
2018-09-06More debugging and a performance checkPjotr Prins
2018-09-06More debugging info and raise SIGINT instead of exitPjotr Prins
2018-09-06Further debuggingPjotr Prins
2018-08-30Debugging calcPabPjotr Prins
2018-08-25Added a test for LMPjotr Prins
2018-07-27Add floating point hardware checking for Intel on GNU compilersPjotr Prins
When using the -check function (the default) it is enabled for Kinship computation and LM/LMM up to individual SNP computation. This means there can no longer be NaN values for matrices that are reused for every SNP, but it is possible to have NaN for individual SNPs. Fixes #161
2018-07-26Unittest: added test for forcing and catching floating point errors (this works)Pjotr Prins
2018-07-14- Guix Makefile added RPATHPjotr Prins
- Added performance metrics in ./test/performance
2017-11-22Remove compiler warnings and add check is_nanPjotr Prins
2017-11-11Disable some tests for bslmm which fail with different BLAS versions.Pjotr Prins
2017-11-11Cleaning up buffer use thanks to compiler warningsPjotr Prins
2017-11-10Tests: quotesPjotr Prins
2017-11-10Fix testPjotr Prins
2017-11-10Tests: added more bslmm testsPjotr Prins
2017-11-09Adding tests for bslmmPjotr Prins
2017-11-09Tests: add -lm testPjotr Prins
2017-11-09Tests: added bslmm testPjotr Prins
2017-10-23Travis-ci:Pjotr Prins
- Disabled gcc-6 since we develop with later tools anyway - Turned the release test into a simple integration test - Adding MacOSX on Travis-ci Tests: Adding tests for Plink w. LOCO Safety: Introduce strtok_safe to get rid of segfaults
2017-10-13Refactored debug settingsPjotr Prins
Replaced eigenlib_dgemm with fast_dgemm - 10-30% speed gain for GEMMA
2017-10-13Replacing first dgemm - tests failPjotr Prins
2017-10-13OpenBlas: preparing for dgemm usePjotr Prins
2017-10-13Fix header for not showing sePjotr Prins
2017-10-13Consolidate into ProgressBar into one function and related updatesPjotr Prins
2017-10-05LMM: skip beta (again) with LRTPjotr Prins
2017-10-05AddressesPjotr Prins
https://github.com/genetics-statistics/GEMMA/issues/81
2017-10-05Adding debug statements on entering functions and added test for issue 58Pjotr Prins
2017-08-26Debug: only output check on -debugPjotr Prins
2017-08-26Tests and enforces added related to ↵Pjotr Prins
https://github.com/genetics-statistics/GEMMA/issues/78
2017-08-22Fixes matrix checks - looking saner nowPjotr Prins
- Matrix checks as described in https://github.com/genetics-statistics/GEMMA/issues/72 - introduces -strict switch which will exit on certain conditions - zero small eigenvalues in EigenDecomp_Zeroed which also checks for negative values - commented out float versions of functions in lapack.cpp (pre-removal) - reverted on disabled regression tests (GEMMA shows its previous behaviour now)
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