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2025-01-03Adding support for checkpoints and relevant documentationPjotr Prins
2024-12-31Adding note because of mvlmm performance test failurePjotr Prins
2024-12-09Expanded error messagePjotr Prins
2024-08-17mvlmm: Dump the initial data.Artyom Bologov
2024-08-17Add -debug-dump CLI flag for dumping data to files.Artyom Bologov
2024-08-17gemma.cpp: Rephrase main LMM track for searchability.Artyom Bologov
2024-08-16gemma,lmm,mvlmm: Add data debug printing everywhere.Artyom Bologov
2024-08-16gemma.cpp: Do eigendecomposition the same way as with LMM.Artyom Bologov
This way, one can export the eigen* data that matches the one used while doing LMM. Otherwise the exported eigenvectors are sliiiiightly off and break the computations depending on them in Mgamma.
2023-06-29Add limitsPjotr Prins
2023-06-29Fix build on guix using limitsPjotr Prins
2022-08-06Add warning when genotypes not in range for mean BIMBAMPjotr Prins
2022-08-05Bump version and minor outputPjotr Prins
2022-02-15Control P_yy round-off.Pjotr Prins
Fixes #210
2021-08-25Static releasePjotr Prins
2021-08-25Add -lmm 9 test and make sure other file formats workPjotr Prins
2021-08-25Disable debugging outputPjotr Prins
2021-08-25iter could go out of bounds in CalcLambda - may explain github #243Pjotr Prins
2021-08-25Make sure P_yy=0 does not fail. Fix undefined iter in loop. Make sure there ↵Pjotr Prins
is cleanup on exit
2021-08-22Disable round-off correctionPjotr Prins
2021-08-16README.mdPjotr Prins
README
2021-08-15VersionPjotr Prins
2021-08-14Aim at fix ofPjotr Prins
GSL ERROR: function value is not finite in brent.c at line 202 errno 9 #210
2021-08-11Minor fix and bump versionPjotr Prins
2021-08-04Document switch -lmm 9Pjotr Prins
2021-08-02* Changed banner to show Copyright (C) 2012–2021, Xiang Zhou, Pjotr Prins ↵Pjotr Prins
and team
2021-01-29Release 0.98.4Pjotr Prins
2021-01-11Only free randomizer when initializedPjotr Prins
Fixes: #239
2020-12-16Fix checks for `-lmm 9` modePjotr Prins
2020-12-16Fix checks for `-lmm 9` modePjotr Prins
2020-12-15Added a test for -lmm 9Pjotr Prins
2020-12-15Introduced `-lmm 9` switch for gemma to capture additive effect togetherPjotr Prins
without the log likelihood without adding computation time. See also #237 Closes #237
2020-12-15Undo function changePjotr Prins
2020-12-15Using M_LLM? modesPjotr Prins
2020-12-15Using M_LLM? modesPjotr Prins
2020-12-15Removed logl_H1 column for -lmm 3 - see also #237Pjotr Prins
2020-12-15No need to pass lambda by addressPjotr Prins
2020-11-28Prepare for releasePjotr Prins
2020-11-28Sane random generator handlingPjotr Prins
2020-11-28Remove unused codePjotr Prins
2020-10-06Improved some error messagesPjotr Prins
2020-10-04Silence means silent!Pjotr Prins
2020-10-01These variables are introduced in DEBUG modePjotr Prins
2020-10-01Adding comments related to ↵Pjotr Prins
https://github.com/genetics-statistics/GEMMA/issues/234
2020-09-30Align R2 filter with docsPjotr Prins
2020-09-29Fixing Travis build, remove gcc warnings and bump versionPjotr Prins
2020-09-29Add notePjotr Prins
2020-09-28More outputPjotr Prins
2020-09-28Scaling attribute showPjotr Prins
2020-09-28Show computed variancePjotr Prins
2020-09-28Show precisionPjotr Prins
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