pangemma - PanGEMMA: Genome-wide Efficient Mixed Model Association

Age	Commit message (Collapse)	Author
2017-10-25	Merge conflicts	Pjotr Prins

2017-10-23	Travis-ci:	Pjotr Prins
	- Disabled gcc-6 since we develop with later tools anyway - Turned the release test into a simple integration test - Adding MacOSX on Travis-ci Tests: Adding tests for Plink w. LOCO Safety: Introduce strtok_safe to get rid of segfaults
2017-10-20	README: added section on reporting bugs and code of conduct	Pjotr Prins

2017-10-20	NaN check only when -debug is used	Pjotr Prins

2017-10-18	Tests still pass with safe_alloc (which sets the buffers to NaNs on allocation)	Pjotr Prins

2017-10-14	Travis	Pjotr Prins

2017-10-14	More travis	Pjotr Prins

2017-10-14	Travis: more fixes	Pjotr Prins

2017-10-14	Travis	Pjotr Prins

2017-10-14	OpenBlas info	Pjotr Prins

2017-10-14	Travis fixes	Pjotr Prins

2017-10-14	README: clearer hint	Pjotr Prins

2017-10-14	Older openblas does not like blasint	Pjotr Prins

2017-10-14	Note on OpenBlas build	Pjotr Prins

2017-10-14	Travis fix	Pjotr Prins

2017-10-14	More disabling of eigenlib (faster compilation) and avoid OPENBLAS_CONST ↵	Pjotr Prins
	which does not work on older cblas.h
2017-10-13	Refactored debug settings	Pjotr Prins
	Replaced eigenlib_dgemm with fast_dgemm - 10-30% speed gain for GEMMA
2017-10-13	Openblas specific include file	Pjotr Prins

2017-10-13	Replacing first dgemm - tests fail	Pjotr Prins

2017-10-13	OpenBlas: preparing for dgemm use	Pjotr Prins

2017-10-13	Fix header for not showing se	Pjotr Prins

2017-10-13	Disable se for lmm=2, see https://github.com/genetics-statistics/GEMMA/issues/81	Pjotr Prins

2017-10-13	Fixed mean and iterations in Plink - now this works	Pjotr Prins

2017-10-13	Progressbar update	Pjotr Prins

2017-10-13	Consolidate into ProgressBar into one function and related updates	Pjotr Prins

2017-10-13	Fix embarrassing bug that broke BIMBAM for larger datasets - found it when ↵	Pjotr Prins
	porting Plink to the new Analyze function
2017-10-13	debug message: minor change	Pjotr Prins

2017-10-13	Updated/revised Makefile for MacOSX.	Peter Carbonetto

2017-10-13	Bumped up version.	Peter Carbonetto

2017-10-13	Change ulong type to long.	Peter Carbonetto

2017-10-13	Fixed warning with assignment in if statement.	Peter Carbonetto

2017-10-13	Make sure __ASSERT_VOID_CAST works	Pjotr Prins

2017-10-13	Removing warnings on debug.h assignment	Pjotr Prins

2017-10-11	Fix embarrassing bug that broke BIMBAM for larger datasets - found it when ↵	Pjotr Prins
	porting Plink to the new Analyze function
2017-10-11	debug message: minor change	Pjotr Prins

2017-10-10	Updated/revised Makefile for MacOSX.	Peter Carbonetto

2017-10-10	Bumped up version.	Peter Carbonetto

2017-10-10	Change ulong type to long.	Peter Carbonetto

2017-10-10	Fixed warning with assignment in if statement.	Peter Carbonetto

2017-10-10	Merge pull request #99 from genenetwork/master	Peter Carbonetto
	Fix compiler warnings on MacOSX.
2017-10-10	Make sure __ASSERT_VOID_CAST works	Pjotr Prins

2017-10-10	Removing warnings on debug.h assignment	Pjotr Prins

2017-10-09	Merge pull request #92 from genenetwork/gemma-master	Peter Carbonetto
	Fixed for a number of outstanding issues.
2017-10-06	LMM: small cleanup and default to NaN initialization	Pjotr Prins

2017-10-06	LMM: BIMBAM and PLINK share same LMM code - test pass	Pjotr Prins

2017-10-06	LMM: lifter genotype parsing for BIMBAM. All tests pass.	Pjotr Prins

2017-10-06	LMM: lifter line no	Pjotr Prins

2017-10-06	LMM: lifted out file access	Pjotr Prins

2017-10-06	Oops: fixed logic problem after removing Oxford data	Pjotr Prins

2017-10-06	Makefile: Some notes on test commands	Pjotr Prins