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authorPjotr Prins2017-10-14 06:12:41 +0000
committerPjotr Prins2017-10-14 06:12:41 +0000
commita2e871270538bb187865c9f00d8aa8f4e817e131 (patch)
tree25bf2578d4eacce00e78bc3373f15df4571bafb7
parent7ca261c914219f1992cacad4207d36c4df6d3e27 (diff)
downloadpangemma-a2e871270538bb187865c9f00d8aa8f4e817e131.tar.gz
Note on OpenBlas build
-rw-r--r--INSTALL.md19
1 files changed, 7 insertions, 12 deletions
diff --git a/INSTALL.md b/INSTALL.md
index dc03a71..19ae290 100644
--- a/INSTALL.md
+++ b/INSTALL.md
@@ -106,19 +106,19 @@ or
### OpenBlas
Linking against a built-from-source OpenBlas is a first optimization
-step because it will optimize code for the local architecture. When
-you check the output .log file of GEMMA after a run, it will tell you
-how the linked-in OpenBlas was compiled.
+step because it will optimize code for the local architecture (on my
+workstation it easily doubles speed). When you check the output .log
+file of GEMMA after a run, it will tell you how the linked-in OpenBlas
+was compiled.
To link a new version, compile OpenBlas as per
[instructions](http://www.openblas.net/). You can start with the default:
make -j 4
-or play with the switches (note NO_AFFINITY may be needed in a future
-version)
+or play with the switches
- make USE_THREAD=1 NUM_THREADS=16 NO_AFFINITY=1 -j 4
+ make USE_THREAD=1 NUM_THREADS=16 -j 4
rendering for example:
@@ -131,7 +131,6 @@ rendering for example:
To install the library, you can run "make PREFIX=/path/to/your/installation install".
-
This generates a static library which you can link using the full path
with using the GEMMA Makefile:
@@ -139,8 +138,4 @@ with using the GEMMA Makefile:
make EIGEN_INCLUDE_PATH=~/.guix-profile/include/eigen3 LIBS="~/tmp/OpenBLAS/libopenblas_haswellp-r0.3.0.dev.a -lgsl -lgslcblas -pthread -lz -llapack" WITH_OPENBLAS=1 -j 4 unittests
-Batch of 1000:
-
-real 4m24.923s
-user 4m33.576s
-sys 0m11.004s
+NOTE: we should make this easier.