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AgeCommit message (Expand)Author
2017-10-14Note on OpenBlas buildPjotr Prins
2017-10-14Travis fixPjotr Prins
2017-10-14More disabling of eigenlib (faster compilation) and avoid OPENBLAS_CONST whic...Pjotr Prins
2017-10-13Refactored debug settings•••Replaced eigenlib_dgemm with fast_dgemm - 10-30% speed gain for GEMMA Pjotr Prins
2017-10-13Openblas specific include filePjotr Prins
2017-10-13Replacing first dgemm - tests failPjotr Prins
2017-10-13OpenBlas: preparing for dgemm usePjotr Prins
2017-10-13Fix header for not showing sePjotr Prins
2017-10-13Disable se for lmm=2, see https://github.com/genetics-statistics/GEMMA/issues/81Pjotr Prins
2017-10-13Fixed mean and iterations in Plink - now this worksPjotr Prins
2017-10-13Progressbar updatePjotr Prins
2017-10-13Consolidate into ProgressBar into one function and related updatesPjotr Prins
2017-10-13Fix embarrassing bug that broke BIMBAM for larger datasets - found it when po...Pjotr Prins
2017-10-13debug message: minor changePjotr Prins
2017-10-13Updated/revised Makefile for MacOSX.Peter Carbonetto
2017-10-13Bumped up version.Peter Carbonetto
2017-10-13Change ulong type to long.Peter Carbonetto
2017-10-13Fixed warning with assignment in if statement.Peter Carbonetto
2017-10-13Make sure __ASSERT_VOID_CAST worksPjotr Prins
2017-10-13Removing warnings on debug.h assignmentPjotr Prins
2017-10-11Merge pull request #100 from genenetwork/master•••Fix bug in bimbam format (introduced with LOCO).Peter Carbonetto
2017-10-11Fix embarrassing bug that broke BIMBAM for larger datasets - found it when po...Pjotr Prins
2017-10-11debug message: minor changePjotr Prins
2017-10-10Updated/revised Makefile for MacOSX.Peter Carbonetto
2017-10-10Bumped up version.Peter Carbonetto
2017-10-10Change ulong type to long.Peter Carbonetto
2017-10-10Fixed warning with assignment in if statement.Peter Carbonetto
2017-10-10Merge pull request #99 from genenetwork/master•••Fix compiler warnings on MacOSX.Peter Carbonetto
2017-10-10Make sure __ASSERT_VOID_CAST worksPjotr Prins
2017-10-10Removing warnings on debug.h assignmentPjotr Prins
2017-10-09Merge pull request #92 from genenetwork/gemma-master•••Fixed for a number of outstanding issues.Peter Carbonetto
2017-10-06LMM: small cleanup and default to NaN initializationPjotr Prins
2017-10-06LMM: BIMBAM and PLINK share same LMM code - test passPjotr Prins
2017-10-06LMM: lifter genotype parsing for BIMBAM. All tests pass.Pjotr Prins
2017-10-06LMM: lifter line noPjotr Prins
2017-10-06LMM: lifted out file accessPjotr Prins
2017-10-06Oops: fixed logic problem after removing Oxford dataPjotr Prins
2017-10-06Makefile: Some notes on test commandsPjotr Prins
2017-10-05Removed Oxford format as per https://github.com/genetics-statistics/GEMMA/iss...Pjotr Prins
2017-10-05LMM: skip beta (again) with LRTPjotr Prins
2017-10-05Addresses••• https://github.com/genetics-statistics/GEMMA/issues/81 Pjotr Prins
2017-10-05Added simulated phenotypes for HLC.•••-n 1 2 3 13 are independent. The others depend on 3 and 13. Pjotr Prins
2017-10-05Adding debug statements on entering functions and added test for issue 58Pjotr Prins
2017-10-05Added a few checks and infoPjotr Prins
2017-09-14Merge pull request #85 from prasunanand/gsl_version_patch•••check GSL_MINOR_VERSION while compilingPjotr Prins
2017-09-14check GSL_MINOR_VERSION while compilingprasun
2017-09-12Merge pull request #83 from genenetwork/master•••Show GSL and Eigen versions in .log outputPjotr Prins
2017-09-12Show GSL and Eigen versions in .log outputPjotr Prins
2017-08-28param.cpp: Set error on errorPjotr Prins
2017-08-27-a•••ReadFile_geno: stop warnings after 10x Pjotr Prins
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