pangemma - PanGEMMA: Genome-wide Efficient Mixed Model Association

Age	Commit message (Collapse)	Author
2017-11-09	Merge branch 'gemma-0.97-preview' of github.com:genetics-statistics/GEMMA ↵	Pjotr Prins
	into gemma-0.97-preview
2017-10-27	Updated version number in Makefile.macosx.	Peter Carbonetto

2017-10-27	Revised MacOSX Makefile.	Peter Carbonetto

2017-10-27	Added Google Groups link to README.	Peter Carbonetto

2017-10-26	README: Windows note	Pjotr Prins

2017-10-26	README: small edits	Pjotr Prins

2017-10-26	README: added mailing list and updated text	Pjotr Prins

2017-10-26	VERSION now contains the GEMMA version number. A script generates a header	Pjotr Prins
	file named ./src/version.h. See Makefile for details.
2017-10-26	Changed SNPs into SNPs/var in output, ref ↵	Pjotr Prins
	https://github.com/genetics-statistics/GEMMA/issues/107#issuecomment-339475978
2017-10-26	Get rid of compiler warning	Pjotr Prins

2017-10-26	Changed SNPs into SNPs/var in output, ref ↵	Pjotr Prins
	https://github.com/genetics-statistics/GEMMA/issues/107#issuecomment-339475978
2017-10-25	Merge conflicts	Pjotr Prins

2017-10-23	Travis-ci:	Pjotr Prins
	- Disabled gcc-6 since we develop with later tools anyway - Turned the release test into a simple integration test - Adding MacOSX on Travis-ci Tests: Adding tests for Plink w. LOCO Safety: Introduce strtok_safe to get rid of segfaults
2017-10-20	README: added section on reporting bugs and code of conduct	Pjotr Prins

2017-10-20	NaN check only when -debug is used	Pjotr Prins

2017-10-18	Tests still pass with safe_alloc (which sets the buffers to NaNs on allocation)	Pjotr Prins

2017-10-14	Travis	Pjotr Prins

2017-10-14	More travis	Pjotr Prins

2017-10-14	Travis: more fixes	Pjotr Prins

2017-10-14	Travis	Pjotr Prins

2017-10-14	OpenBlas info	Pjotr Prins

2017-10-14	Travis fixes	Pjotr Prins

2017-10-14	README: clearer hint	Pjotr Prins

2017-10-14	Older openblas does not like blasint	Pjotr Prins

2017-10-14	Note on OpenBlas build	Pjotr Prins

2017-10-14	Travis fix	Pjotr Prins

2017-10-14	More disabling of eigenlib (faster compilation) and avoid OPENBLAS_CONST ↵	Pjotr Prins
	which does not work on older cblas.h
2017-10-13	Refactored debug settings	Pjotr Prins
	Replaced eigenlib_dgemm with fast_dgemm - 10-30% speed gain for GEMMA
2017-10-13	Openblas specific include file	Pjotr Prins

2017-10-13	Replacing first dgemm - tests fail	Pjotr Prins

2017-10-13	OpenBlas: preparing for dgemm use	Pjotr Prins

2017-10-13	Fix header for not showing se	Pjotr Prins

2017-10-13	Disable se for lmm=2, see https://github.com/genetics-statistics/GEMMA/issues/81	Pjotr Prins

2017-10-13	Fixed mean and iterations in Plink - now this works	Pjotr Prins

2017-10-13	Progressbar update	Pjotr Prins

2017-10-13	Consolidate into ProgressBar into one function and related updates	Pjotr Prins

2017-10-13	Fix embarrassing bug that broke BIMBAM for larger datasets - found it when ↵	Pjotr Prins
	porting Plink to the new Analyze function
2017-10-13	debug message: minor change	Pjotr Prins

2017-10-13	Updated/revised Makefile for MacOSX.	Peter Carbonetto

2017-10-13	Bumped up version.	Peter Carbonetto

2017-10-13	Change ulong type to long.	Peter Carbonetto

2017-10-13	Fixed warning with assignment in if statement.	Peter Carbonetto

2017-10-13	Make sure __ASSERT_VOID_CAST works	Pjotr Prins

2017-10-13	Removing warnings on debug.h assignment	Pjotr Prins

2017-10-11	Merge pull request #100 from genenetwork/master	Peter Carbonetto
	Fix bug in bimbam format (introduced with LOCO).
2017-10-11	Fix embarrassing bug that broke BIMBAM for larger datasets - found it when ↵	Pjotr Prins
	porting Plink to the new Analyze function
2017-10-11	debug message: minor change	Pjotr Prins

2017-10-10	Updated/revised Makefile for MacOSX.	Peter Carbonetto

2017-10-10	Bumped up version.	Peter Carbonetto

2017-10-10	Change ulong type to long.	Peter Carbonetto