pangemma - PanGEMMA: Genome-wide Efficient Mixed Model Association

Age	Commit message (Collapse)	Author
2017-10-18	Tests still pass with safe_alloc (which sets the buffers to NaNs on allocation)	Pjotr Prins

2017-10-14	Travis	Pjotr Prins

2017-10-14	More travis	Pjotr Prins

2017-10-14	Travis: more fixes	Pjotr Prins

2017-10-14	Travis	Pjotr Prins

2017-10-14	OpenBlas info	Pjotr Prins

2017-10-14	Travis fixes	Pjotr Prins

2017-10-14	README: clearer hint	Pjotr Prins

2017-10-14	Older openblas does not like blasint	Pjotr Prins

2017-10-14	Note on OpenBlas build	Pjotr Prins

2017-10-14	Travis fix	Pjotr Prins

2017-10-14	More disabling of eigenlib (faster compilation) and avoid OPENBLAS_CONST ↵	Pjotr Prins
	which does not work on older cblas.h
2017-10-13	Refactored debug settings	Pjotr Prins
	Replaced eigenlib_dgemm with fast_dgemm - 10-30% speed gain for GEMMA
2017-10-13	Openblas specific include file	Pjotr Prins

2017-10-13	Replacing first dgemm - tests fail	Pjotr Prins

2017-10-13	OpenBlas: preparing for dgemm use	Pjotr Prins

2017-10-13	Fix header for not showing se	Pjotr Prins

2017-10-13	Disable se for lmm=2, see https://github.com/genetics-statistics/GEMMA/issues/81	Pjotr Prins

2017-10-13	Fixed mean and iterations in Plink - now this works	Pjotr Prins

2017-10-13	Progressbar update	Pjotr Prins

2017-10-13	Consolidate into ProgressBar into one function and related updates	Pjotr Prins

2017-10-13	Fix embarrassing bug that broke BIMBAM for larger datasets - found it when ↵	Pjotr Prins
	porting Plink to the new Analyze function
2017-10-13	debug message: minor change	Pjotr Prins

2017-10-13	Updated/revised Makefile for MacOSX.	Peter Carbonetto

2017-10-13	Bumped up version.	Peter Carbonetto

2017-10-13	Change ulong type to long.	Peter Carbonetto

2017-10-13	Fixed warning with assignment in if statement.	Peter Carbonetto

2017-10-13	Make sure __ASSERT_VOID_CAST works	Pjotr Prins

2017-10-13	Removing warnings on debug.h assignment	Pjotr Prins

2017-10-06	LMM: small cleanup and default to NaN initialization	Pjotr Prins

2017-10-06	LMM: BIMBAM and PLINK share same LMM code - test pass	Pjotr Prins

2017-10-06	LMM: lifter genotype parsing for BIMBAM. All tests pass.	Pjotr Prins

2017-10-06	LMM: lifter line no	Pjotr Prins

2017-10-06	LMM: lifted out file access	Pjotr Prins

2017-10-06	Oops: fixed logic problem after removing Oxford data	Pjotr Prins

2017-10-06	Makefile: Some notes on test commands	Pjotr Prins

2017-10-05	Removed Oxford format as per ↵	Pjotr Prins
	https://github.com/genetics-statistics/GEMMA/issues/46
2017-10-05	LMM: skip beta (again) with LRT	Pjotr Prins

2017-10-05	Addresses	Pjotr Prins
	https://github.com/genetics-statistics/GEMMA/issues/81
2017-10-05	Added simulated phenotypes for HLC.	Pjotr Prins
	-n 1 2 3 13 are independent. The others depend on 3 and 13.
2017-10-05	Adding debug statements on entering functions and added test for issue 58	Pjotr Prins

2017-10-05	Added a few checks and info	Pjotr Prins

2017-09-14	Merge pull request #85 from prasunanand/gsl_version_patch	Pjotr Prins
	check GSL_MINOR_VERSION while compiling
2017-09-14	check GSL_MINOR_VERSION while compiling	prasun

2017-09-12	Merge pull request #83 from genenetwork/master	Pjotr Prins
	Show GSL and Eigen versions in .log output
2017-09-12	Show GSL and Eigen versions in .log output	Pjotr Prins

2017-08-28	param.cpp: Set error on error	Pjotr Prins

2017-08-27	-a	Pjotr Prins
	ReadFile_geno: stop warnings after 10x
2017-08-27	Makefile: clean up of the main Makefile and changed build instructions	Pjotr Prins
	to align with normal build systems * Debug mode is now the default (use DEBUG= to disable) * Dynamic linking is now the default (use FORCE_STATIC=1 for static) * Removed references to 32-bit compilation (default is $arch)
2017-08-27	Removed large sections of commented out code	Pjotr Prins