diff options
Diffstat (limited to 'test/performance/releases.org')
| -rw-r--r-- | test/performance/releases.org | 25 |
1 files changed, 13 insertions, 12 deletions
diff --git a/test/performance/releases.org b/test/performance/releases.org index 2419960..f1772dc 100644 --- a/test/performance/releases.org +++ b/test/performance/releases.org @@ -90,7 +90,7 @@ trix const*, gsl_matrix*, gsl_matrix*) onst*) #+END_SRC -* GEMMA 0.98-beta1 +* GEMMA 0.98 (release) #+BEGIN_SRC bash linux-vdso.so.1 (0x00007ffe475d2000) @@ -107,9 +107,8 @@ onst*) #+END_SRC #+BEGIN_SRC bash - -time ./bin/gemma -g ~/tmp/mouse_hs1940/mouse_hs1940.geno.txt.gz -p ~/tmp/mouse_hs1940/mouse_hs1940.pheno.txt -a ~/tmp/mouse_hs1940/mouse_hs1940.anno.txt -gk -no-check -GEMMA 0.98-beta1 (2018-09-06) by Xiang Zhou and team (C) 2012-2018 +time ./bin/gemma -g ./example/mouse_hs1940.geno.txt.gz -p ./example/mouse_hs1940.pheno.txt -a ./example/mouse_hs1940.anno.txt -gk -no-check +GEMMA 0.98 (2018-09-26) by Xiang Zhou and team (C) 2012-2018 Reading Files ... ## number of total individuals = 1940 ## number of analyzed individuals = 1410 @@ -119,15 +118,16 @@ Reading Files ... ## number of analyzed SNPs = 10768 Calculating Relatedness Matrix ... ================================================== 100% +**** INFO: Done. -real 0m16.875s -user 0m25.180s -sys 0m1.740s +real 0m7.169s +user 0m13.656s +sys 0m1.584s #+END_SRC #+BEGIN_SRC bash -lario:~/izip/git/opensource/genenetwork/gemma$ time bin/gemma -g ~/tmp/mouse_hs1940/mouse_hs1940.geno.txt.gz -p ~/tmp/mouse_hs1940/mouse_hs1940.pheno.txt -n 1 -a ~/tmp/mouse_hs1940/mouse_hs1940.anno.txt -k ./output/result.cXX.txt -lmm -no-check -GEMMA 0.98-beta1 (2018-09-06) by Xiang Zhou and team (C) 2012-2018 +time ./bin/gemma -g ./example/mouse_hs1940.geno.txt.gz -p ./example/mouse_hs1940.pheno.txt -n 1 -a ./example/mouse_hs1940.anno.txt -k ./output/result.cXX.txt -lmm -no-check +GEMMA 0.98 (2018-09-26) by Xiang Zhou and team (C) 2012-2018 Reading Files ... ## number of total individuals = 1940 ## number of analyzed individuals = 1410 @@ -139,10 +139,11 @@ Start Eigen-Decomposition... pve estimate =0.608801 se(pve) =0.032774 ================================================== 100% +**** INFO: Done. -real 0m13.255s -user 0m18.272s -sys 0m3.324s +real 0m12.356s +user 0m15.788s +sys 0m3.036s #+END_SRC * GEMMA 0.98-pre |